positive-unlabelled learning
Positive-Unlabelled Learning for Improving Image-based Recommender System Explainability
Fernández-Campa-González, Álvaro, Paz-Ruza, Jorge, Alonso-Betanzos, Amparo, Guijarro-Berdiñas, Bertha
Among the existing approaches for visual-based Recommender System (RS) explainability, utilizing user-uploaded item images as efficient, trustable explanations is a promising option. However, current models following this paradigm assume that, for any user, all images uploaded by other users can be considered negative training examples (i.e. bad explanatory images), an inadvertedly naive labelling assumption that contradicts the rationale of the approach. This work proposes a new explainer training pipeline by leveraging Positive-Unlabelled (PU) Learning techniques to train image-based explainer with refined subsets of reliable negative examples for each user selected through a novel user-personalized, two-step, similarity-based PU Learning algorithm. Computational experiments show this PU-based approach outperforms the state-of-the-art non-PU method in six popular real-world datasets, proving that an improvement of visual-based RS explainability can be achieved by maximizing training data quality rather than increasing model complexity.
Positive-Unlabelled Learning for Identifying New Candidate Dietary Restriction-related Genes among Ageing-related Genes
Paz-Ruza, Jorge, Freitas, Alex A., Alonso-Betanzos, Amparo, Guijarro-Berdiñas, Bertha
Dietary Restriction (DR) is one of the most popular anti-ageing interventions, prompting exhaustive research into genes associated with its mechanisms. Recently, Machine Learning (ML) has been explored to identify potential DR-related genes among ageing-related genes, aiming to minimize costly wet lab experiments needed to expand our knowledge on DR. However, to train a model from positive (DR-related) and negative (non-DR-related) examples, existing ML methods naively label genes without known DR relation as negative examples, assuming that lack of DR-related annotation for a gene represents evidence of absence of DR-relatedness, rather than absence of evidence; this hinders the reliability of the negative examples (non-DR-related genes) and the method's ability to identify novel DR-related genes. This work introduces a novel gene prioritization method based on the two-step Positive-Unlabelled (PU) Learning paradigm: using a similarity-based, KNN-inspired approach, our method first selects reliable negative examples among the genes without known DR associations. Then, these reliable negatives and all known positives are used to train a classifier that effectively differentiates DR-related and non-DR-related genes, which is finally employed to generate a more reliable ranking of promising genes for novel DR-relatedness. Our method significantly outperforms the existing state-of-the-art non-PU approach for DR-relatedness prediction in three relevant performance metrics. In addition, curation of existing literature finds support for the top-ranked candidate DR-related genes identified by our model.