Recently, there has been great success in applying deep neural networks on graph structured data. Most work, however, focuses on either node-or graph-level supervised learning, such as node, link or graph classification or node-level unsupervised learning (e.g., node clustering). Despite its wide range of possible applications, graph-level unsupervised representation learning has not received much attention yet. This might be mainly attributed to the high representation complexity of graphs, which can be represented by n! equivalent adjacency matrices, where n is the number of nodes. In this work we address this issue by proposing a permutation-invariant variational autoencoder for graph structured data. Our proposed model indirectly learns to match the node order of input and output graph, without imposing a particular node order or performing expensive graph matching. We demonstrate the effectiveness of our proposed model for graph reconstruction, generation and interpolation and evaluate the expressive power of extracted representations for downstream graph-level classification and regression.

Signal recovery under generative neural network priors has emerged as a promising direction in statistical inference and computational imaging. Theoretical analysis of reconstruction algorithms under generative priors is, however, challenging. For generative priors with fully connected layers and Gaussian i.i.d.

Bayesian causal discovery aims to infer the posterior distribution over causal models from observed data, quantifying epistemic uncertainty and benefiting downstream tasks. However, computational challenges arise due to joint inference over combinatorial space of Directed Acyclic Graphs (DAGs) and nonlinear functions. Despite recent progress towards efficient posterior inference over DAGs, existing methods are either limited to variational inference on node permutation matrices for linear causal models, leading to compromised inference accuracy, or continuous relaxation of adjacency matrices constrained by a DAG regularizer, which cannot ensure resulting graphs are DAGs. In this work, we introduce a scalable Bayesian causal discovery framework based on a combination of stochastic gradient Markov Chain Monte Carlo (SG-MCMC) and Variational Inference (VI) that overcomes these limitations. Our approach directly samples DAGs from the posterior without requiring any DAG regularization, simultaneously draws function parameter samples and is applicable to both linear and nonlinear causal models. To enable our approach, we derive a novel equivalence to the permutation-based DAG learning, which opens up possibilities of using any relaxed gradient estimator defined over permutations. To our knowledge, this is the first framework applying gradient-based MCMC sampling for causal discovery. Empirical evaluation on synthetic and real-world datasets demonstrate our approach's effectiveness compared to state-of-the-art baselines.

Optimization over permutations is typically an NP-hard problem that arises extensively in ranking, matching, tracking, etc. Birkhoff polytope-based relaxation methods have made significant advancements, particularly in penalty-free optimization and probabilistic inference. Relaxation onto the orthogonal group offers unique potential advantages such as a lower representation dimension and preservation of inner products; however, equally effective approaches remain unexplored. To bridge the gap, we present a temperature-controlled differentiable transformation that maps unconstrained vector space to the orthogonal group, where the temperature, in the limit, concentrates orthogonal matrices near permutation matrices. This transformation naturally implements a parameterization for the relaxation of permutation matrices, allowing for gradient-based optimization of problems involving permutations. Additionally, by deriving a re-parameterized gradient estimator, this transformation also provides efficient stochastic optimization over the latent permutations. Extensive experiments involving the optimization over permutation matrices validate the effectiveness of the proposed method.

Group equivariance has emerged as a valuable inductive bias in deep learning, enhancing generalization, data efficiency, and robustness. Classically, group equivariant methods require the groups of interest to be known beforehand, which may not be realistic for real-world data. Additionally, baking in fixed group equivariance may impose overly restrictive constraints on model architecture. This highlights the need for methods that can dynamically discover and apply symmetries as soft constraints. For neural network architectures, equivariance is commonly achieved through group transformations of a canonical weight tensor, resulting in weight sharing over a given group $G$. In this work, we propose to *learn* such a weight-sharing scheme by defining a collection of learnable doubly stochastic matrices that act as soft permutation matrices on canonical weight tensors, which can take regular group representations as a special case. This yields learnable kernel transformations that are jointly optimized with downstream tasks. We show that when the dataset exhibits strong symmetries, the permutation matrices will converge to regular group representations and our weight-sharing networks effectively become regular group convolutions. Additionally, the flexibility of the method enables it to effectively pick up on partial symmetries.

Remark Since we apply the row-wise softmax in Eq. (7), P jpij = 1 i and pij 0 (i,j) is alwaysfulfilled.If C(P)=0,allbutoneentryinacolumn pi, are0andtheotherentryis1. Hence,P ipij = 1 j isfulfilled. Synthetic random graph generation To generate train and test graph datasets we utilized the pythonpackage NetworkX[1]. Ego graphs extracted from Binominal graphs (p (0.2,0.6))selecting all neighbours of onerandomnode. Training Details We did not perform an extensive hyperparameter evaluation for the different experiments and mostly followed [2]for hyperparameter selection. We set the graph embedding dimension to 64.

Most work, however, focuses on either node-or graph-level supervised learning, such as node, link or graph classification or node-level unsupervised learning (e.g., node clustering). Despite its wide range of possible applications, graph-level unsupervised representation learning has not received much attention yet. This might be mainly attributed to the high representation complexity ofgraphs, which can berepresented byn!equivalent adjacencymatrices, where n is the number of nodes. In this work we address this issue by proposing a permutation-invariant variational autoencoder for graph structured data.

This transformation naturally implements a parameterization for the relaxation of permutation matrices, allowing for gradient-based optimization of problems involving permutations.