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Multi-instance Learning as Downstream Task of Self-Supervised Learning-based Pre-trained Model

arXiv.org Artificial Intelligence

In deep multi-instance learning, the number of applicable instances depends on the data set. In histopathology images, deep learning multi-instance learners usually assume there are hundreds to thousands instances in a bag. However, when the number of instances in a bag increases to 256 in brain hematoma CT, learning becomes extremely difficult. In this paper, we address this drawback. To overcome this problem, we propose using a pre-trained model with self-supervised learning for the multi-instance learner as a downstream task. With this method, even when the original target task suffers from the spurious correlation problem, we show improvements of 5% to 13% in accuracy and 40% to 55% in the F1 measure for the hypodensity marker classification of brain hematoma CT.


Deep learning for automated detection of breast cancer in deep ultraviolet fluorescence images with diffusion probabilistic model

arXiv.org Artificial Intelligence

Data limitation is a significant challenge in applying deep learning to medical images. Recently, the diffusion probabilistic model (DPM) has shown the potential to generate high-quality images by converting Gaussian random noise into realistic images. In this paper, we apply the DPM to augment the deep ultraviolet fluorescence (DUV) image dataset with an aim to improve breast cancer classification for intraoperative margin assessment. For classification, we divide the whole surface DUV image into small patches and extract convolutional features for each patch by utilizing the pre-trained ResNet. Then, we feed them into an XGBoost classifier for patch-level decisions and then fuse them with a regional importance map computed by Grad-CAM++ for whole surface-level prediction. Our experimental results show that augmenting the training dataset with the DPM significantly improves breast cancer detection performance in DUV images, increasing accuracy from 93% to 97%, compared to using Affine transformations and ProGAN.


Online Embedding Multi-Scale CLIP Features into 3D Maps

arXiv.org Artificial Intelligence

This study introduces a novel approach to online embedding of multi-scale CLIP (Contrastive Language-Image Pre-Training) features into 3D maps. By harnessing CLIP, this methodology surpasses the constraints of conventional vocabulary-limited methods and enables the incorporation of semantic information into the resultant maps. While recent approaches have explored the embedding of multi-modal features in maps, they often impose significant computational costs, lacking practicality for exploring unfamiliar environments in real time. Our approach tackles these challenges by efficiently computing and embedding multi-scale CLIP features, thereby facilitating the exploration of unfamiliar environments through real-time map generation. Moreover, the embedding CLIP features into the resultant maps makes offline retrieval via linguistic queries feasible. In essence, our approach simultaneously achieves real-time object search and mapping of unfamiliar environments. Additionally, we propose a zero-shot object-goal navigation system based on our mapping approach, and we validate its efficacy through object-goal navigation, offline object retrieval, and multi-object-goal navigation in both simulated environments and real robot experiments. The findings demonstrate that our method not only exhibits swifter performance than state-of-the-art mapping methods but also surpasses them in terms of the success rate of object-goal navigation tasks.


Critical Evaluation of Artificial Intelligence as Digital Twin of Pathologist for Prostate Cancer Pathology

arXiv.org Artificial Intelligence

Prostate cancer pathology plays a crucial role in clinical management but is time-consuming. Artificial intelligence (AI) shows promise in detecting prostate cancer and grading patterns. We tested an AI-based digital twin of a pathologist, vPatho, on 2,603 histology images of prostate tissue stained with hematoxylin and eosin. We analyzed various factors influencing tumor-grade disagreement between vPatho and six human pathologists. Our results demonstrated that vPatho achieved comparable performance in prostate cancer detection and tumor volume estimation, as reported in the literature. Concordance levels between vPatho and human pathologists were examined. Notably, moderate to substantial agreement was observed in identifying complementary histological features such as ductal, cribriform, nerve, blood vessels, and lymph cell infiltrations. However, concordance in tumor grading showed a decline when applied to prostatectomy specimens (kappa = 0.44) compared to biopsy cores (kappa = 0.70). Adjusting the decision threshold for the secondary Gleason pattern from 5% to 10% improved the concordance level between pathologists and vPatho for tumor grading on prostatectomy specimens (kappa from 0.44 to 0.64). Potential causes of grade discordance included the vertical extent of tumors toward the prostate boundary and the proportions of slides with prostate cancer. Gleason pattern 4 was particularly associated with discordance. Notably, grade discordance with vPatho was not specific to any of the six pathologists involved in routine clinical grading. In conclusion, our study highlights the potential utility of AI in developing a digital twin of a pathologist. This approach can help uncover limitations in AI adoption and the current grading system for prostate cancer pathology.


Adversarial Attacks on Image Classification Models: FGSM and Patch Attacks and their Impact

arXiv.org Artificial Intelligence

This chapter introduces the concept of adversarial attacks on image classification models built on convolutional neural networks (CNN). CNNs are very popular deep-learning models which are used in image classification tasks. However, very powerful and pre-trained CNN models working very accurately on image datasets for image classification tasks may perform disastrously when the networks are under adversarial attacks. In this work, two very well-known adversarial attacks are discussed and their impact on the performance of image classifiers is analyzed. These two adversarial attacks are the fast gradient sign method (FGSM) and adversarial patch attack. These attacks are launched on three powerful pre-trained image classifier architectures, ResNet-34, GoogleNet, and DenseNet-161. The classification accuracy of the models in the absence and presence of the two attacks are computed on images from the publicly accessible ImageNet dataset. The results are analyzed to evaluate the impact of the attacks on the image classification task.


Compressed Gastric Image Generation Based on Soft-Label Dataset Distillation for Medical Data Sharing

arXiv.org Artificial Intelligence

Background and objective: Sharing of medical data is required to enable the cross-agency flow of healthcare information and construct high-accuracy computer-aided diagnosis systems. However, the large sizes of medical datasets, the massive amount of memory of saved deep convolutional neural network (DCNN) models, and patients' privacy protection are problems that can lead to inefficient medical data sharing. Therefore, this study proposes a novel soft-label dataset distillation method for medical data sharing. Methods: The proposed method distills valid information of medical image data and generates several compressed images with different data distributions for anonymous medical data sharing. Furthermore, our method can extract essential weights of DCNN models to reduce the memory required to save trained models for efficient medical data sharing. Results: The proposed method can compress tens of thousands of images into several soft-label images and reduce the size of a trained model to a few hundredths of its original size. The compressed images obtained after distillation have been visually anonymized; therefore, they do not contain the private information of the patients. Furthermore, we can realize high-detection performance with a small number of compressed images. Conclusions: The experimental results show that the proposed method can improve the efficiency and security of medical data sharing.


A New Weakly Supervised Learning Approach for Real-time Iron Ore Feed Load Estimation

arXiv.org Artificial Intelligence

Iron ore feed load control is one of the most critical settings in a mineral grinding process, directly impacting the quality of final products. The setting of the feed load is mainly determined by the characteristics of the ore pellets. However, the characterisation of ore is challenging to acquire in many production environments, leading to poor feed load settings and inefficient production processes. This paper presents our work using deep learning models for direct ore feed load estimation from ore pellet images. To address the challenges caused by the large size of a full ore pellets image and the shortage of accurately annotated data, we treat the whole modelling process as a weakly supervised learning problem. A two-stage model training algorithm and two neural network architectures are proposed. The experiment results show competitive model performance, and the trained models can be used for real-time feed load estimation for grind process optimisation.


Plexus Convolutional Neural Network (PlexusNet): A novel neural network architecture for histologic image analysis

arXiv.org Artificial Intelligence

Different convolutional neural network (CNN) models have been tested for their application in histologic imaging analyses. However, these models are prone to overfitting due to their large parameter capacity, requiring more data and expensive computational resources for model training. Given these limitations, we developed and tested PlexusNet for histologic evaluation using a single GPU by a batch dimension of 16x512x512x3. We utilized 62 Hematoxylin and eosin stain (H&E) annotated histological images of radical prostatectomy cases from TCGA-PRAD and Stanford University, and 24 H&E whole-slide images with hepatocellular carcinoma from TCGA-LIHC diagnostic histology images. Base models were DenseNet, Inception V3, and MobileNet and compared with PlexusNet. The dice coefficient (DSC) was evaluated for each model. PlexusNet delivered comparable classification performance (DSC at patch level: 0.89) for H&E whole-slice images in distinguishing prostate cancer from normal tissues. The parameter capacity of PlexusNet is 9 times smaller than MobileNet or 58 times smaller than Inception V3, respectively. Similar findings were observed in distinguishing hepatocellular carcinoma from non-cancerous liver histologies (DSC at patch level: 0.85). As conclusion, PlexusNet represents a novel model architecture for histological image analysis that achieves classification performance comparable to the base models while providing orders-of-magnitude memory savings.