Previous studies have shown that it is possible to map brain activation data of subjects viewing images onto the feature representation space of not only vision models (modality-specific decoding) but also language models (cross-modal decoding). In this work, we introduce and use a new large-scale fMRI dataset (~8,500 trials per subject) of people watching both images and text descriptions of such images. This novel dataset enables the development of modality-agnostic decoders: a single decoder that can predict which stimulus a subject is seeing, irrespective of the modality (image or text) in which the stimulus is presented. We train and evaluate such decoders to map brain signals onto stimulus representations from a large range of publicly available vision, language and multimodal (vision+language) models. Our findings reveal that (1) modality-agnostic decoders perform as well as (and sometimes even better than) modality-specific decoders (2) modality-agnostic decoders mapping brain data onto representations from unimodal models perform as well as decoders relying on multimodal representations (3) while language and low-level visual (occipital) brain regions are best at decoding text and image stimuli, respectively, high-level visual (temporal) regions perform well on both stimulus types.

Parkinson's disease (PD) is a common and complex neurodegenerative disorder with 5 stages in the Hoehn and Yahr scaling. Given the heterogeneity of PD, it is challenging to classify early stages 1 and 2 and detect brain function alterations. Functional magnetic resonance imaging (fMRI) is a promising tool in revealing functional connectivity (FC) differences and developing biomarkers in PD. Some machine learning approaches like support vector machine and logistic regression have been successfully applied in the early diagnosis of PD using fMRI data, which outperform classifiers based on manually selected morphological features. However, the early-stage characterization in FC changes has not been fully investigated. Given the complexity and non-linearity of fMRI data, we propose the use of a long short-term memory (LSTM) network to characterize the early stages of PD. The study included 84 subjects (56 in stage 2 and 28 in stage 1) from the Parkinson's Progression Markers Initiative (PPMI), the largest available public PD dataset. Under a repeated 10-fold stratified cross-validation, the LSTM model reached an accuracy of 71.63%, 13.52% higher than the best traditional machine learning method, indicating significantly better robustness and accuracy compared with other machine learning classifiers. We used the learned LSTM model weights to select the top brain regions that contributed to model prediction and performed FC analyses to characterize functional changes with disease stage and motor impairment to gain better insight into the brain mechanisms of PD.

In applications of graphical models, we typically have more information than just the samples themselves. A prime example is the estimation of brain connectivity networks based on fMRI data, where in addition to the samples themselves, the spatial positions of the measurements are readily available. With particular regard for this application, we are thus interested in ways to incorporate additional knowledge most effectively into graph estimation. Our approach to this is to make neighborhood selection receptive to additional knowledge by strengthening the role of the tuning parameters. We demonstrate that this concept (i) can improve reproducibility, (ii) is computationally convenient and efficient, and (iii) carries a lucid Bayesian interpretation. We specifically show that the approach provides effective estimations of brain connectivity graphs from fMRI data. However, providing a general scheme for the inclusion of additional knowledge, our concept is expected to have applications in a wide range of domains.