noisy copy
DAS-N2N: Machine learning Distributed Acoustic Sensing (DAS) signal denoising without clean data
Lapins, Sacha, Butcher, Antony, Kendall, J. -Michael, Hudson, Thomas S., Stork, Anna L., Werner, Maximilian J., Gunning, Jemma, Brisbourne, Alex M.
This article presents a weakly supervised machine learning method, which we call DAS-N2N, for suppressing strong random noise in distributed acoustic sensing (DAS) recordings. DAS-N2N requires no manually produced labels (i.e., pre-determined examples of clean event signals or sections of noise) for training and aims to map random noise processes to a chosen summary statistic, such as the distribution mean, median or mode, whilst retaining the true underlying signal. This is achieved by splicing (joining together) two fibres hosted within a single optical cable, recording two noisy copies of the same underlying signal corrupted by different independent realizations of random observational noise. A deep learning model can then be trained using only these two noisy copies of the data to produce a near fully-denoised copy. Once the model is trained, only noisy data from a single fibre is required. Using a dataset from a DAS array deployed on the surface of the Rutford Ice Stream in Antarctica, we demonstrate that DAS-N2N greatly suppresses incoherent noise and enhances the signal-to-noise ratios (SNR) of natural microseismic icequake events. We further show that this approach is inherently more efficient and effective than standard stop/pass band and white noise (e.g., Wiener) filtering routines, as well as a comparable self-supervised learning method based on masking individual DAS channels. Our preferred model for this task is lightweight, processing 30 seconds of data recorded at a sampling frequency of 1000 Hz over 985 channels (approx. 1 km of fiber) in $<$1 s. Due to the high noise levels in DAS recordings, efficient data-driven denoising methods, such as DAS-N2N, will prove essential to time-critical DAS earthquake detection, particularly in the case of microseismic monitoring.
- North America > United States (0.68)
- Antarctica (0.25)
- Europe > United Kingdom > England > Cambridgeshire > Cambridge (0.14)
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Deep DNA Storage: Scalable and Robust DNA Storage via Coding Theory and Deep Learning
Bar-Lev, Daniella, Orr, Itai, Sabary, Omer, Etzion, Tuvi, Yaakobi, Eitan
The concept of DNA storage was first suggested in 1959 by Richard Feynman who shared his vision regarding nanotechnology in the talk "There is plenty of room at the bottom". Later, towards the end of the 20-th century, the interest in storage solutions based on DNA molecules was increased as a result of the human genome project which in turn led to a significant progress in sequencing and assembly methods. DNA storage enjoys major advantages over the well-established magnetic and optical storage solutions. As opposed to magnetic solutions, DNA storage does not require electrical supply to maintain data integrity and is superior to other storage solutions in both density and durability. Given the trends in cost decreases of DNA synthesis and sequencing, it is now acknowledged that within the next 10-15 years DNA storage may become a highly competitive archiving technology and probably later the main such technology. With that said, the current implementations of DNA based storage systems are very limited and are not fully optimized to address the unique pattern of errors which characterize the synthesis and sequencing processes. In this work, we propose a robust, efficient and scalable solution to implement DNA-based storage systems. Our method deploys Deep Neural Networks (DNN) which reconstruct a sequence of letters based on imperfect cluster of copies generated by the synthesis and sequencing processes. A tailor-made Error-Correcting Code (ECC) is utilized to combat patterns of errors which occur during this process. Since our reconstruction method is adapted to imperfect clusters, our method overcomes the time bottleneck of the noisy DNA copies clustering process by allowing the use of a rapid and scalable pseudo-clustering instead. Our architecture combines between convolutions and transformers blocks and is trained using synthetic data modelled after real data statistics.
- Asia > Middle East > Israel > Tel Aviv District > Tel Aviv (0.04)
- Asia > Middle East > Israel > Haifa District > Haifa (0.04)