nodule segmentation
A Deep Learning Framework for Thyroid Nodule Segmentation and Malignancy Classification from Ultrasound Images
Abdelrazik, Omar, Elsayed, Mohamed, Wahab, Noorul, Rajpoot, Nasir, Shephard, Adam
Ultrasound-based risk stratification of thyroid nodules is a critical clinical task, but it suffers from high inter-observer variability. While many deep learning (DL) models function as "black boxes," we propose a fully automated, two-stage framework for interpretable malignancy prediction. Our method achieves interpretability by forcing the model to focus only on clinically relevant regions. First, a TransUNet model automatically segments the thyroid nodule. The resulting mask is then used to create a region of interest around the nodule, and this localised image is fed directly into a ResNet-18 classifier. We evaluated our framework using 5-fold cross-validation on a clinical dataset of 349 images, where it achieved a high F1-score of 0.852 for predicting malignancy. To validate its performance, we compared it against a strong baseline using a Random Forest classifier with hand-crafted morphological features, which achieved an F1-score of 0.829. The superior performance of our DL framework suggests that the implicit visual features learned from the localised nodule are more predictive than explicit shape features alone. This is the first fully automated end-to-end pipeline for both detecting thyroid nodules on ultrasound images and predicting their malignancy.
EMeRALDS: Electronic Medical Record Driven Automated Lung Nodule Detection and Classification in Thoracic CT Images
Eman, Hafza, Shaukat, Furqan, Zafar, Muhammad Hamza, Anwar, Syed Muhammad
Objective: Lung cancer is a leading cause of cancer-related mortality worldwide, primarily due to delayed diagnosis and poor early detection. This study aims to develop a computer-aided diagnosis (CAD) system that leverages large vision-language models (VLMs) for the accurate detection and classification of pulmonary nodules in computed tomography (CT) scans. Methods: We propose an end-to-end CAD pipeline consisting of two modules: (i) a detection module (CADe) based on the Segment Anything Model 2 (SAM2), in which the standard visual prompt is replaced with a text prompt encoded by CLIP (Contrastive Language-Image Pretraining), and (ii) a diagnosis module (CADx) that calculates similarity scores between segmented nodules and radiomic features. To add clinical context, synthetic electronic medical records (EMRs) were generated using radiomic assessments by expert radiologists and combined with similarity scores for final classification. The method was tested on the publicly available LIDC-IDRI dataset (1,018 CT scans). Results: The proposed approach demonstrated strong performance in zero-shot lung nodule analysis. The CADe module achieved a Dice score of 0.92 and an IoU of 0.85 for nodule segmentation. The CADx module attained a specificity of 0.97 for malignancy classification, surpassing existing fully supervised methods. Conclusions: The integration of VLMs with radiomics and synthetic EMRs allows for accurate and clinically relevant CAD of pulmonary nodules in CT scans. The proposed system shows strong potential to enhance early lung cancer detection, increase diagnostic confidence, and improve patient management in routine clinical workflows.
Advanced Lung Nodule Segmentation and Classification for Early Detection of Lung Cancer using SAM and Transfer Learning
Lung cancer is an extremely lethal disease primarily due to its late-stage diagnosis and significant mortality rate, making it the major cause of cancer-related demises globally. Machine Learning (ML) and Convolution Neural network (CNN) based Deep Learning (DL) techniques are primarily used for precise segmentation and classification of cancerous nodules in the CT (Computed Tomography) or MRI images. This study introduces an innovative approach to lung nodule segmentation by utilizing the Segment Anything Model (SAM) combined with transfer learning techniques. Precise segmentation of lung nodules is crucial for the early detection of lung cancer. The proposed method leverages Bounding Box prompts and a vision transformer model to enhance segmentation performance, achieving high accuracy, Dice Similarity Coefficient (DSC) and Intersection over Union (IoU) metrics. The integration of SAM and Transfer Learning significantly improves Computer-Aided Detection (CAD) systems in medical imaging, particularly for lung cancer diagnosis. The findings demonstrate the proposed model effectiveness in precisely segmenting lung nodules from CT scans, underscoring its potential to advance early detection and improve patient care outcomes in lung cancer diagnosis. The results show SAM Model with transfer learning achieving a DSC of 97.08% and an IoU of 95.6%, for segmentation and accuracy of 96.71% for classification indicates that ,its performance is noteworthy compared to existing techniques.
S3TU-Net: Structured Convolution and Superpixel Transformer for Lung Nodule Segmentation
Wu, Yuke, Liu, Xiang, Shi, Yunyu, Chen, Xinyi, Wang, Zhenglei, Xu, YuQing, Wang, Shuo Hong
The irregular and challenging characteristics of lung adenocarcinoma nodules in computed tomography (CT) images complicate staging diagnosis, making accurate segmentation critical for clinicians to extract detailed lesion information. In this study, we propose a segmentation model, S3TU-Net, which integrates multi-dimensional spatial connectors and a superpixel-based visual transformer. S3TU-Net is built on a multi-view CNN-Transformer hybrid architecture, incorporating superpixel algorithms, structured weighting, and spatial shifting techniques to achieve superior segmentation performance. The model leverages structured convolution blocks (DWF-Conv/D2BR-Conv) to extract multi-scale local features while mitigating overfitting. To enhance multi-scale feature fusion, we introduce the S2-MLP Link, integrating spatial shifting and attention mechanisms at the skip connections. Additionally, the residual-based superpixel visual transformer (RM-SViT) effectively merges global and local features by employing sparse correlation learning and multi-branch attention to capture long-range dependencies, with residual connections enhancing stability and computational efficiency. Experimental results on the LIDC-IDRI dataset demonstrate that S3TU-Net achieves a DSC, precision, and IoU of 89.04%, 90.73%, and 90.70%, respectively. Compared to recent methods, S3TU-Net improves DSC by 4.52% and sensitivity by 3.16%, with other metrics showing an approximate 2% increase. In addition to comparison and ablation studies, we validated the generalization ability of our model on the EPDB private dataset, achieving a DSC of 86.40%.
MESAHA-Net: Multi-Encoders based Self-Adaptive Hard Attention Network with Maximum Intensity Projections for Lung Nodule Segmentation in CT Scan
Usman, Muhammad, Rehman, Azka, Shahid, Abdullah, Latif, Siddique, Byon, Shi Sub, Kim, Sung Hyun, Khan, Tariq Mahmood, Shin, Yeong Gil
Accurate lung nodule segmentation is crucial for early-stage lung cancer diagnosis, as it can substantially enhance patient survival rates. Computed tomography (CT) images are widely employed for early diagnosis in lung nodule analysis. However, the heterogeneity of lung nodules, size diversity, and the complexity of the surrounding environment pose challenges for developing robust nodule segmentation methods. In this study, we propose an efficient end-to-end framework, the multi-encoder-based self-adaptive hard attention network (MESAHA-Net), for precise lung nodule segmentation in CT scans. MESAHA-Net comprises three encoding paths, an attention block, and a decoder block, facilitating the integration of three types of inputs: CT slice patches, forward and backward maximum intensity projection (MIP) images, and region of interest (ROI) masks encompassing the nodule. By employing a novel adaptive hard attention mechanism, MESAHA-Net iteratively performs slice-by-slice 2D segmentation of lung nodules, focusing on the nodule region in each slice to generate 3D volumetric segmentation of lung nodules. The proposed framework has been comprehensively evaluated on the LIDC-IDRI dataset, the largest publicly available dataset for lung nodule segmentation. The results demonstrate that our approach is highly robust for various lung nodule types, outperforming previous state-of-the-art techniques in terms of segmentation accuracy and computational complexity, rendering it suitable for real-time clinical implementation.
Automated Segmentation and Recurrence Risk Prediction of Surgically Resected Lung Tumors with Adaptive Convolutional Neural Networks
Basta, Marguerite B., Hussein, Sarfaraz, Hsu, Hsiang, Calmon, Flavio P.
Lung cancer is the leading cause of cancer related mortality by a significant margin. While new technologies, such as image segmentation, have been paramount to improved detection and earlier diagnoses, there are still significant challenges in treating the disease. In particular, despite an increased number of curative resections, many postoperative patients still develop recurrent lesions. Consequently, there is a significant need for prognostic tools that can more accurately predict a patient's risk for recurrence. In this paper, we explore the use of convolutional neural networks (CNNs) for the segmentation and recurrence risk prediction of lung tumors that are present in preoperative computed tomography (CT) images. First, expanding upon recent progress in medical image segmentation, a residual U-Net is used to localize and characterize each nodule. Then, the identified tumors are passed to a second CNN for recurrence risk prediction. The system's final results are produced with a random forest classifier that synthesizes the predictions of the second network with clinical attributes. The segmentation stage uses the LIDC-IDRI dataset and achieves a dice score of 70.3%. The recurrence risk stage uses the NLST dataset from the National Cancer institute and achieves an AUC of 73.0%. Our proposed framework demonstrates that first, automated nodule segmentation methods can generalize to enable pipelines for a wide range of multitask systems and second, that deep learning and image processing have the potential to improve current prognostic tools. To the best of our knowledge, it is the first fully automated segmentation and recurrence risk prediction system.
Volumetric Lung Nodule Segmentation using Adaptive ROI with Multi-View Residual Learning
Usman, Muhammad, Lee, Byoung-Dai, Byon, Shi Sub, Kim, Sung Hyun, IlLee, Byung
Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, which can enhance patient survival possibilities. A number of nodule segmentation techniques have been proposed, however, all of the existing techniques rely on radiologist 3-D volume of interest (VOI) input or use the constant region of interest (ROI) and only investigate the presence of nodule voxels within the given VOI. Such approaches restrain the solutions to investigate the nodule presence outside the given VOI and also include the redundant structures into VOI, which may lead to inaccurate nodule segmentation. In this work, a novel semi-automated approach for 3-D segmentation of nodule in volumetric computerized tomography (CT) lung scans has been proposed. The proposed technique can be segregated into two stages, at the first stage, it takes a 2-D ROI containing the nodule as input and it performs patch-wise investigation along the axial axis with a novel adaptive ROI strategy. The adaptive ROI algorithm enables the solution to dynamically select the ROI for the surrounding slices to investigate the presence of nodule using deep residual U-Net architecture. The first stage provides the initial estimation of nodule which is further utilized to extract the VOI. At the second stage, the extracted VOI is further investigated along the coronal and sagittal axis with two different networks and finally, all the estimated masks are fed into the consensus module to produce the final volumetric segmentation of nodule. The proposed approach has been rigorously evaluated on the LIDC dataset, which is the largest publicly available dataset. The result suggests that the approach is significantly robust and accurate as compared to the previous state of the art techniques.