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 neural system identification


Neural system identification for large populations separating "what" and "where"

Neural Information Processing Systems

Neuroscientists classify neurons into different types that perform similar computations at different locations in the visual field. Traditional methods for neural system identification do not capitalize on this separation of "what" and "where". Learning deep convolutional feature spaces that are shared among many neurons provides an exciting path forward, but the architectural design needs to account for data limitations: While new experimental techniques enable recordings from thousands of neurons, experimental time is limited so that one can sample only a small fraction of each neuron's response space. Here, we show that a major bottleneck for fitting convolutional neural networks (CNNs) to neural data is the estimation of the individual receptive field locations - a problem that has been scratched only at the surface thus far. We propose a CNN architecture with a sparse readout layer factorizing the spatial (where) and feature (what) dimensions. Our network scales well to thousands of neurons and short recordings and can be trained end-to-end. We evaluate this architecture on ground-truth data to explore the challenges and limitations of CNN-based system identification. Moreover, we show that our network model outperforms current state-of-the art system identification models of mouse primary visual cortex.


Reviews: Neural system identification for large populations separating "what" and "where"

Neural Information Processing Systems

I am no expert in this field, so right now I can not fully judge on the potential impact of the paper at hand in this field of science. So first I want to ask a few clarifying questions to the authors to give me a clearer picture. I will also give a preliminary judgement at the end. Introuction 34-47: I think it should be mentioned that using more expressive models such like CNNs will come at a cost. Simple models such as GLMs are very interpretable, it also easier to argue for biological plausibility than with neural network trained by backpropagation.


Time Series Anomaly Detection for Cyber-physical Systems via Neural System Identification and Bayesian Filtering

arXiv.org Machine Learning

Recent advances in AIoT technologies have led to an increasing popularity of utilizing machine learning algorithms to detect operational failures for cyber-physical systems (CPS). In its basic form, an anomaly detection module monitors the sensor measurements and actuator states from the physical plant, and detects anomalies in these measurements to identify abnormal operation status. Nevertheless, building effective anomaly detection models for CPS is rather challenging as the model has to accurately detect anomalies in presence of highly complicated system dynamics and unknown amount of sensor noise. In this work, we propose a novel time series anomaly detection method called Neural System Identification and Bayesian Filtering (NSIBF) in which a specially crafted neural network architecture is posed for system identification, i.e., capturing the dynamics of CPS in a dynamical state-space model; then a Bayesian filtering algorithm is naturally applied on top of the "identified" state-space model for robust anomaly detection by tracking the uncertainty of the hidden state of the system recursively over time. We provide qualitative as well as quantitative experiments with the proposed method on a synthetic and three real-world CPS datasets, showing that NSIBF compares favorably to the state-of-the-art methods with considerable improvements on anomaly detection in CPS.


Neural system identification for large populations separating "what" and "where"

Neural Information Processing Systems

Neuroscientists classify neurons into different types that perform similar computations at different locations in the visual field. Traditional methods for neural system identification do not capitalize on this separation of "what" and "where". Learning deep convolutional feature spaces that are shared among many neurons provides an exciting path forward, but the architectural design needs to account for data limitations: While new experimental techniques enable recordings from thousands of neurons, experimental time is limited so that one can sample only a small fraction of each neuron's response space. Here, we show that a major bottleneck for fitting convolutional neural networks (CNNs) to neural data is the estimation of the individual receptive field locations – a problem that has been scratched only at the surface thus far. We propose a CNN architecture with a sparse readout layer factorizing the spatial (where) and feature (what) dimensions.