neural manifold
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Bubblewrap: Online tiling and real-time flow prediction on neural manifolds
While most classic studies of function in experimental neuroscience have focused on the coding properties of individual neurons, recent developments in recording technologies have resulted in an increasing emphasis on the dynamics of neural populations. This has given rise to a wide variety of models for analyzing population activity in relation to experimental variables, but direct testing of many neural population hypotheses requires intervening in the system based on current neural state, necessitating models capable of inferring neural state online. Existing approaches, primarily based on dynamical systems, require strong parametric assumptions that are easily violated in the noise-dominated regime and do not scale well to the thousands of data channels in modern experiments. To address this problem, we propose a method that combines fast, stable dimensionality reduction with a soft tiling of the resulting neural manifold, allowing dynamics to be approximated as a probability flow between tiles. This method can be fit efficiently using online expectation maximization, scales to tens of thousands of tiles, and outperforms existing methods when dynamics are noise-dominated or feature multi-modal transition probabilities. The resulting model can be trained at kiloHertz data rates, produces accurate approximations of neural dynamics within minutes, and generates predictions on submillisecond time scales. It retains predictive performance throughout many time steps into the future and is fast enough to serve as a component of closed-loop causal experiments.
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The Memory Paradox: Why Our Brains Need Knowledge in an Age of AI
Oakley, Barbara, Johnston, Michael, Chen, Ken-Zen, Jung, Eulho, Sejnowski, Terrence J.
In the age of generative AI and ubiquitous digital tools, human cognition faces a structural paradox: as external aids become more capable, internal memory systems risk atrophy. Drawing on neuroscience and cognitive psychology, this paper examines how heavy reliance on AI systems and discovery-based pedagogies may impair the consolidation of declarative and procedural memory -- systems essential for expertise, critical thinking, and long-term retention. We review how tools like ChatGPT and calculators can short-circuit the retrieval, error correction, and schema-building processes necessary for robust neural encoding. Notably, we highlight striking parallels between deep learning phenomena such as "grokking" and the neuroscience of overlearning and intuition. Empirical studies are discussed showing how premature reliance on AI during learning inhibits proceduralization and intuitive mastery. We argue that effective human-AI interaction depends on strong internal models -- biological "schemata" and neural manifolds -- that enable users to evaluate, refine, and guide AI output. The paper concludes with policy implications for education and workforce training in the age of large language models.
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- (6 more...)
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- Health & Medicine > Therapeutic Area > Neurology (1.00)
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Bubblewrap: Online tiling and real-time flow prediction on neural manifolds
While most classic studies of function in experimental neuroscience have focused on the coding properties of individual neurons, recent developments in recording technologies have resulted in an increasing emphasis on the dynamics of neural populations. This has given rise to a wide variety of models for analyzing population activity in relation to experimental variables, but direct testing of many neural population hypotheses requires intervening in the system based on current neural state, necessitating models capable of inferring neural state online. Existing approaches, primarily based on dynamical systems, require strong parametric assumptions that are easily violated in the noise-dominated regime and do not scale well to the thousands of data channels in modern experiments. To address this problem, we propose a method that combines fast, stable dimensionality reduction with a soft tiling of the resulting neural manifold, allowing dynamics to be approximated as a probability flow between tiles. This method can be fit efficiently using online expectation maximization, scales to tens of thousands of tiles, and outperforms existing methods when dynamics are noise-dominated or feature multi-modal transition probabilities.
Bubblewrap: Online tiling and real-time flow prediction on neural manifolds
While most classic studies of function in experimental neuroscience have focused on the coding properties of individual neurons, recent developments in recording technologies have resulted in an increasing emphasis on the dynamics of neural populations. This has given rise to a wide variety of models for analyzing population activity in relation to experimental variables, but direct testing of many neural population hypotheses requires intervening in the system based on current neural state, necessitating models capable of inferring neural state online. Existing approaches, primarily based on dynamical systems, require strong parametric assumptions that are easily violated in the noise-dominated regime and do not scale well to the thousands of data channels in modern experiments. To address this problem, we propose a method that combines fast, stable dimensionality reduction with a soft tiling of the resulting neural manifold, allowing dynamics to be approximated as a probability flow between tiles. This method can be fit efficiently using online expectation maximization, scales to tens of thousands of tiles, and outperforms existing methods when dynamics are noise-dominated or feature multi-modal transition probabilities.
Nonlinear classification of neural manifolds with contextual information
Mignacco, Francesca, Chou, Chi-Ning, Chung, SueYeon
Understanding how neural systems efficiently process information through distributed representations is a fundamental challenge at the interface of neuroscience and machine learning. Recent approaches analyze the statistical and geometrical attributes of neural representations as population-level mechanistic descriptors of task implementation. In particular, manifold capacity has emerged as a promising framework linking population geometry to the separability of neural manifolds. However, this metric has been limited to linear readouts. Here, we propose a theoretical framework that overcomes this limitation by leveraging contextual input information. We derive an exact formula for the context-dependent capacity that depends on manifold geometry and context correlations, and validate it on synthetic and real data. Our framework's increased expressivity captures representation untanglement in deep networks at early stages of the layer hierarchy, previously inaccessible to analysis. As context-dependent nonlinearity is ubiquitous in neural systems, our data-driven and theoretically grounded approach promises to elucidate context-dependent computation across scales, datasets, and models.
A Spiking Neural Network based on Neural Manifold for Augmenting Intracortical Brain-Computer Interface Data
Zheng, Shengjie, Li, Wenyi, Qian, Lang, He, Chenggang, Li, Xiaojian
Brain-computer interfaces (BCIs), transform neural signals in the brain into in-structions to control external devices. However, obtaining sufficient training data is difficult as well as limited. With the advent of advanced machine learning methods, the capability of brain-computer interfaces has been enhanced like never before, however, these methods require a large amount of data for training and thus require data augmentation of the limited data available. Here, we use spiking neural networks (SNN) as data generators. It is touted as the next-generation neu-ral network and is considered as one of the algorithms oriented to general artifi-cial intelligence because it borrows the neural information processing from bio-logical neurons. We use the SNN to generate neural spike information that is bio-interpretable and conforms to the intrinsic patterns in the original neural data. Ex-periments show that the model can directly synthesize new spike trains, which in turn improves the generalization ability of the BCI decoder. Both the input and output of the spiking neural model are spike information, which is a brain-inspired intelligence approach that can be better integrated with BCI in the future.
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