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 multivariate functional data



Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data

Neural Information Processing Systems

Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles. To enhance interpretability, our model involves a low-dimensional causal embedded space such that all the relevant causal information in the multivariate functional data is preserved in this lower-dimensional subspace. We prove that the proposed model is causally identifiable under standard assumptions that are often made in the causal discovery literature. To carry out inference of our model, we develop a fully Bayesian framework with suitable prior specifications and uncertainty quantification through posterior summaries. We illustrate the superior performance of our method over existing methods in terms of causal graph estimation through extensive simulation studies. We also demonstrate the proposed method using a brain EEG dataset.



Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data

Neural Information Processing Systems

Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles.



Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data

Neural Information Processing Systems

Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles. To enhance interpretability, our model involves a low-dimensional causal embedded space such that all the relevant causal information in the multivariate functional data is preserved in this lower-dimensional subspace. We prove that the proposed model is causally identifiable under standard assumptions that are often made in the causal discovery literature. To carry out inference of our model, we develop a fully Bayesian framework with suitable prior specifications and uncertainty quantification through posterior summaries.


FDApy: a Python package for functional data

arXiv.org Machine Learning

We introduce FDApy, an open-source Python package for the analysis of functional data. The package provides tools for the representation of (multivariate) functional data defined on different dimensional domains and for functional data that is irregularly sampled. Additionally, dimension reduction techniques are implemented for multivariate and/or multidimensional functional data that are regularly or irregularly sampled. A toolbox for generating functional datasets is also provided. The documentation includes installation and usage instructions, examples on simulated and real datasets and a complete description of the API. FDApy is released under the MIT license. The code and documentation are available at https://github.com/StevenGolovkine/FDApy.


On the estimation of the number of components in multivariate functional principal component analysis

arXiv.org Machine Learning

Happ and Greven [2018] develop innovative theory and methodology for the dimension reduction of multivariate functional data on possibly different dimensional domains (e.g., curves and images), which extends existing methods that were limited to either univariate functional data or multivariate functional data on a common one-dimensional domain. Recent research has shown a growing presence of data defined on different dimensional domains in diverse fields such as biomechanics, e.g., Warmenhoven et al. [2019] and neuroscience, e.g., Song and Kim [2022], so we expect the work to have significant practical impact. We aim to provide commentary on the estimation of the number of principal components utilising the methodology devised in Happ and Greven [2018]. To achieve this, we conduct an extensive simulation study and subsequently propose practical guidelines for practitioners to adeptly choose the appropriate number of components for multivariate functional datasets. For ease of presentation, we use the same notation as in Happ and Greven [2018].


Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data

arXiv.org Machine Learning

Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles. To enhance interpretability, our model involves a low-dimensional causal embedded space such that all the relevant causal information in the multivariate functional data is preserved in this lower-dimensional subspace. We prove that the proposed model is causally identifiable under standard assumptions that are often made in the causal discovery literature. To carry out inference of our model, we develop a fully Bayesian framework with suitable prior specifications and uncertainty quantification through posterior summaries. We illustrate the superior performance of our method over existing methods in terms of causal graph estimation through extensive simulation studies. We also demonstrate the proposed method using a brain EEG dataset.


On the use of the Gram matrix for multivariate functional principal components analysis

arXiv.org Machine Learning

Dimension reduction is crucial in functional data analysis (FDA). The key tool to reduce the dimension of the data is functional principal component analysis. Existing approaches for functional principal component analysis usually involve the diagonalization of the covariance operator. With the increasing size and complexity of functional datasets, estimating the covariance operator has become more challenging. Therefore, there is a growing need for efficient methodologies to estimate the eigencomponents. Using the duality of the space of observations and the space of functional features, we propose to use the inner-product between the curves to estimate the eigenelements of multivariate and multidimensional functional datasets. The relationship between the eigenelements of the covariance operator and those of the inner-product matrix is established. We explore the application of these methodologies in several FDA settings and provide general guidance on their usability.