We introduce a novel method for partial optimization of the connections in Deep Differentiable Logic Gate Networks (LGNs). Our training method utilizes a probability distribution over a subset of connections per gate input, selecting the connection with highest merit, after which the gate-types are selected. We show that the connection-optimized LGNs outperform standard fixed-connection LGNs on the Yin-Yang, MNIST and Fashion-MNIST benchmarks, while requiring only a fraction of the number of logic gates. When training all connections, we demonstrate that 8000 simple logic gates are sufficient to achieve over 98% on the MNIST data set. Additionally, we show that our network has 24 times fewer gates, while performing better on the MNIST data set compared to standard fully connected LGNs. As such, our work shows a pathway towards fully trainable Boolean logic.

The loss surfaces of deep neural networks have been the subject of several studies, theoretical and experimental, over the last few years. One strand of work considers the complexity, in the sense of local optima, of high dimensional random functions with the aim of informing how local optimisation methods may perform in such complicated settings. Prior work of Choromanska et al (2015) established a direct link between the training loss surfaces of deep multi-layer perceptron networks and spherical multi-spin glass models under some very strong assumptions on the network and its data. In this work, we test the validity of this approach by removing the undesirable restriction to ReLU activation functions. In doing so, we chart a new path through the spin glass complexity calculations using supersymmetric methods in Random Matrix Theory which may prove useful in other contexts. Our results shed new light on both the strengths and the weaknesses of spin glass models in this context.

We propose a novel approach to unsupervised learning by constructing a non-linear embedding of the data into a low-dimensional space followed by any conventional clustering algorithm. The embedding promotes clusterability of the data and is comprised of two mappings: the encoder of an autoencoder neural network and the output of UMAP algorithm. The autoencoder is trained with a composite loss function that incorporates both a conventional data reconstruction as a regularization component and a clustering-promoting component built using the spectral graph theory. The two embeddings and the subsequent clustering are integrated into a three-stage unsupervised learning framework, referred to as Autoencoded UMAP-Enhanced Clustering (AUEC). When applied to MNIST data, AUEC significantly outperforms the state-of-the-art techniques in terms of clustering accuracy.

Data analysis often requires methods that are invariant with respect to specific transformations, such as rotations in case of images or shifts in case of images and time series. While principal component analysis (PCA) is a widely-used dimension reduction technique, it lacks robustness with respect to these transformations. Modern alternatives, such as autoencoders, can be invariant with respect to specific transformations but are generally not interpretable. We introduce General Transform-Invariant Principal Component Analysis (GT-PCA) as an effective and interpretable alternative to PCA and autoencoders. We propose a neural network that efficiently estimates the components and show that GT-PCA significantly outperforms alternative methods in experiments based on synthetic and real data.

Given that no existing graph construction method can generate a perfect graph for a given dataset, graph-based algorithms are invariably affected by the plethora of redundant and erroneous edges present within the constructed graphs. In this paper, we propose treating these noisy edges as adversarial attack and use a spectral adversarial robustness evaluation method to diminish the impact of noisy edges on the performance of graph algorithms. Our method identifies those points that are less vulnerable to noisy edges and leverages only these robust points to perform graph-based algorithms. Our experiments with spectral clustering, one of the most representative and widely utilized graph algorithms, reveal that our methodology not only substantially elevates the precision of the algorithm but also greatly accelerates its computational efficiency by leveraging only a select number of robust data points.

Overfitting is a phenomenon that occurs when a machine learning model is trained for too long and focused too much on the exact fitness of the training samples to the provided training labels and cannot keep track of the predictive rules that would be useful on the test data. This phenomenon is commonly attributed to memorization of particular samples, memorization of the noise, and forced fitness into a data set of limited samples by using a high number of neurons. While it is true that the model encodes various peculiarities as the training process continues, we argue that most of the overfitting occurs in the process of reconciling sharply defined membership ratios. In this study, we present an approach that increases the classification accuracy of machine learning models by allowing the model to negotiate output representations of the samples with previously determined class labels. By setting up a negotiation between the models interpretation of the inputs and the provided labels, we not only increased average classification accuracy but also decreased the rate of overfitting without applying any other regularization tricks. By implementing our negotiation paradigm approach to several low regime machine learning problems by generating overfitting scenarios from publicly available data sets such as CIFAR 10, CIFAR 100, and MNIST we have demonstrated that the proposed paradigm has more capacity than its intended purpose. We are sharing the experimental results and inviting the machine learning community to explore the limits of the proposed paradigm. We also aim to incentive the community to exploit the negotiation paradigm to overcome the learning related challenges in other research fields such as continual learning. The Python code of the experimental setup is uploaded to GitHub.

As is true of many complex tasks, the work of discovering, describing, and understanding the diversity of life on Earth (viz., biological systematics and taxonomy) requires many tools. Some of this work can be accomplished as it has been done in the past, but some aspects present us with challenges which traditional knowledge and tools cannot adequately resolve. One such challenge is presented by species complexes in which the morphological similarities among the group members make it difficult to reliably identify known species and detect new ones. We address this challenge by developing new tools using the principles of machine learning to resolve two specific questions related to species complexes. The first question is formulated as a classification problem in statistics and machine learning and the second question is an out-of-distribution (OOD) detection problem. We apply these tools to a species complex comprising Southeast Asian stream frogs (Limnonectes kuhlii complex) and employ a morphological character (hind limb skin texture) traditionally treated qualitatively in a quantitative and objective manner. We demonstrate that deep neural networks can successfully automate the classification of an image into a known species group for which it has been trained. We further demonstrate that the algorithm can successfully classify an image into a new class if the image does not belong to the existing classes. Additionally, we use the larger MNIST dataset to test the performance of our OOD detection algorithm. We finish our paper with some concluding remarks regarding the application of these methods to species complexes and our efforts to document true biodiversity. This paper has online supplementary materials.