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Missing Data: Datasets, Imputation, and Benchmarking

Neural Information Processing Systems

Datasets and code files are publicly accessible at Link. Our dataset will be hosted on both the GitHub and cloud storage drive. Code for the TimesNet Link Code for the SAITS Link 5.2 Trajectory Prediction Codes The following are the codes for the trajectory prediction methods used in our work. The dataset is primarily created by an academic team (students and faculty). The data statistics are shown in Section 4 of the main paper.






Meta-Imputation Balanced (MIB): An Ensemble Approach for Handling Missing Data in Biomedical Machine Learning

Azad, Fatemeh, Bosnić, Zoran, Kukar, Matjaž

arXiv.org Artificial Intelligence

--Missing data represents a fundamental challenge in machine learning applications, often reducing model performance and reliability. This problem is particularly acute in fields like bioinformatics and clinical machine learning, where datasets are frequently incomplete due to the nature of both data generation and data collection. While numerous imputation methods exist, from simple statistical techniques to advanced deep learning models, no single method consistently performs well across diverse datasets and missingness mechanisms. This paper proposes a novel Meta-Imputation approach that learns to combine the outputs of multiple base imputers to predict missing values more accurately. By training the proposed method called Meta-Imputation Balanced (MIB) on synthetically masked data with known ground truth, the system learns to predict the most suitable imputed value based on the behavior of each method. We evaluate our method on tabular data under the Missing Completely at Random (MCAR) assumption using both direct metrics, where Mean Absolute Error (MAE) and Root Mean Squared Error (RMSE) are computed between imputed values and their corresponding original ground truth values in the artificially masked positions, and indirect metrics, which measure the RMSE of a target variable predicted by machine learning models trained on the imputed datasets. Across three benchmark datasets, the model achieved the lowest or near-lowest RMSE and delivered stable downstream predictive performance, even when individual imputers varied in performance.


Real-Time Network Traffic Forecasting with Missing Data: A Generative Model Approach

Deng, Lei, Xu, Wenhan, Li, Jingwei, Tsang, Danny H. K.

arXiv.org Artificial Intelligence

Real-time network traffic forecasting is crucial for network management and early resource allocation. Existing network traffic forecasting approaches operate under the assumption that the network traffic data is fully observed. However, in practical scenarios, the collected data are often incomplete due to various human and natural factors. In this paper, we propose a generative model approach for real-time network traffic forecasting with missing data. Firstly, we model the network traffic forecasting task as a tensor completion problem. Secondly, we incorporate a pre-trained generative model to achieve the low-rank structure commonly associated with tensor completion. The generative model effectively captures the intrinsic low-rank structure of network traffic data during pre-training and enables the mapping from a compact latent representation to the tensor space. Thirdly, rather than directly optimizing the high-dimensional tensor, we optimize its latent representation, which simplifies the optimization process and enables real-time forecasting. We also establish a theoretical recovery guarantee that quantifies the error bound of the proposed approach. Experiments on real-world datasets demonstrate that our approach achieves accurate network traffic forecasting within 100 ms, with a mean absolute error (MAE) below 0.002, as validated on the Abilene dataset.


Score Matching With Missing Data

Givens, Josh, Liu, Song, Reeve, Henry W J

arXiv.org Machine Learning

Score matching is a vital tool for learning the distribution of data with applications across many areas including diffusion processes, energy based modelling, and graphical model estimation. Despite all these applications, little work explores its use when data is incomplete. We address this by adapting score matching (and its major extensions) to work with missing data in a flexible setting where data can be partially missing over any subset of the coordinates. We provide two separate score matching variations for general use, an importance weighting (IW) approach, and a variational approach. We provide finite sample bounds for our IW approach in finite domain settings and show it to have especially strong performance in small sample lower dimensional cases. Complementing this, we show our variational approach to be strongest in more complex high-dimensional settings which we demonstrate on graphical model estimation tasks on both real and simulated data.


Imputation of Missing Data in Smooth Pursuit Eye Movements Using a Self-Attention-based Deep Learning Approach

Bejani, Mehdi, Perez-de-Arenaza-Pozo, Guillermo, Arias-Londoño, Julián D., Godino-LLorente, Juan I.

arXiv.org Artificial Intelligence

Missing data is a relevant issue in time series, especially in biomedical sequences such as those corresponding to smooth pursuit eye movements, which often contain gaps due to eye blinks and track losses, complicating the analysis and extraction of meaningful biomarkers. In this paper, a novel imputation framework is proposed using Self-Attention-based Imputation networks for time series, which leverages the power of deep learning and self-attention mechanisms to impute missing data. We further refine the imputed data using a custom made autoencoder, tailored to represent smooth pursuit eye movement sequences. The proposed approach was implemented using 5,504 sequences from 172 Parkinsonian patients and healthy controls. Results show a significant improvement in the accuracy of reconstructed eye movement sequences with respect to other state of the art techniques, substantially reducing the values for common time domain error metrics such as the mean absolute error, mean relative error, and root mean square error, while also preserving the signal's frequency domain characteristics. Moreover, it demonstrates robustness when large intervals of data are missing. This method offers an alternative solution for robustly handling missing data in time series, enhancing the reliability of smooth pursuit analysis for the screening and monitoring of neurodegenerative disorders.


Pedestrian Trajectory Prediction with Missing Data: Datasets, Imputation, and Benchmarking

Neural Information Processing Systems

Pedestrian trajectory prediction is crucial for several applications such as robotics and self-driving vehicles. Significant progress has been made in the past decade thanks to the availability of pedestrian trajectory datasets, which enable trajectory prediction methods to learn from pedestrians' past movements and predict future trajectories. However, these datasets and methods typically assume that the observed trajectory sequence is complete, ignoring real-world issues such as sensor failure, occlusion, and limited fields of view that can result in missing values in observed trajectories. To address this challenge, we present TrajImpute, a pedestrian trajectory prediction dataset that simulates missing coordinates in the observed trajectory, enhancing real-world applicability. TrajImpute maintains a uniform distribution of missing data within the observed trajectories.