linear model
Multimodality Stacking with Blockwise missing values and application to the PIONeeR biomarkers study for prediction of resistance to immunotherapy
Boussena, Mohamed, Monville, Florence, Fieschi-Meric, Jacques, Vely, Frederic, Milpied, Pierre, Mazieres, Julien, Perol, Maurice, Vivier, Eric, Greillier, Laurent, Barlesi, Fabrice, Benzekry, Sebastien
Integrating multimodal datasets in clinical oncology is frequently hindered by high dimensionality and blockwise missingness, where entire data sources are unavailable for specific patient subsets. Standard survival models often struggle with these gaps, leading to biased results or patient exclusion. We introduce Multimodality Stacking with Blockwise missing values (MSB), a late-fusion framework for survival analysis that independently models modality-specific features before aggregating predictions via a cross-validated stacking meta-learner. MSB was validated on the PIONeeR study (n=443 patients, 378 biomarkers across eight heterogeneous sources) to predict progression-free survival in advanced non-small cell lung cancer patients receiving immunotherapy. MSB yielded higher predictive performance (C-index) than baseline algorithms. Improvements varied by baseline strength: linear models showed a 15.9% increase (p<0.001 for the Wilcoxon signed-rank test), random survival forests gained 5.4% (p=0.002), and gradient boosting methods improved by 2.1% (p=0.030). Beyond discrimination, MSB reduced the generalization gap (train-test difference in 5 folds cross-validation repeated 3 times: 0.055 vs 0.380 for linear models). Permutation importance analysis identified routine laboratory markers, clinical features, and PD-L1 expression as primary predictive drivers. Missing block indicators showed negligible importance, suggesting the model learned from biomarker values rather than data availability patterns. MSB provides a statistically validated framework for multimodal survival prediction with blockwise missingness. By enabling systematic biomarker evaluation without requiring complete data, MSB offers a practical tool for predictive modeling in biomedical research, pending external validation. Implementation is available at https://github.com/MohamedBoussena/MSB under Inria license.
Multi-task Linear Regression without Eigenvalue Lower Bounds: Adaptivity, Robustness and Safety
We study the multi-task linear regression problem in the presence of contaminated tasks. We address the setting where the unknown parameters of a majority of tasks are close in the $\ell_2$-norm, while a fraction of tasks are arbitrary outliers. Existing theoretical frameworks for this problem rely heavily on the assumption that the empirical second moment of each task has a minimum eigenvalue bounded away from zero (order $ฮฉ(1)$). Crucially, this assumption fails in many high-dimensional scenarios, rendering prior guarantees vacuous. To overcome this limitation, we propose an estimator based on matrix-weighted norm regularization. We also introduce a relative balancedness condition, quantified by a balancedness constant, that compares each task's second moment with the average inlier geometry and relaxes the need for taskwise second-moment lower bounds. In favorable regimes with moderate balancedness, our prediction MSE bounds match the rate of Duan and Wang (2023) under substantially weaker spectral assumptions; the resulting task-overall MSE is minimax optimal up to logarithmic factors. Furthermore, we demonstrate that our estimator enjoys a safety guarantee: when the relevant balancedness constant is large or infinite, or when tasks are unrelated, the method performs no worse than independent task learning. Consequently, our methodology achieves simultaneous adaptivity to task similarity, robustness to outliers, and safety outside favorable transfer regimes.
Nearly Optimal Subdata Selection
Yang, Min, Zheng, Wei, Stufken, John, Chang, Ming-Chung, Tian, Ting, Wang, Xueqin
When, in terms of the number of data points, the size of a dataset exceeds available computing resources, or when labeling is expensive, an attractive solution consists of selecting only some of the data points (subdata) for further consideration. A central question for selecting subdata of size $n$ from $N$ available data points is which $n$ points to select. While an answer to this question depends on the objective, one approach for a parametric model and a focus on parameter estimation is to select subdata that retains maximal information. Identifying such subdata is a classical NP-hard problem due to its inherent discreteness. Based on optimal approximate design theory, we develop a new methodology for information-based subdata selection, resulting in subdata that approaches the optimal solution. To achieve this, we develop a novel algorithm that applies to a general model, accommodates arbitrary choices of $N$ and $n$, and supports multiple optimality criteria, and we prove its convergence. Moreover, the new methodology facilitates an assessment of the efficiency of subdata selected by any method by obtaining tight lower and upper bounds for the efficiency. We show that the subdata obtained through the new methodology is highly efficient and outperforms all existing methods.
Can we globally optimize cross validation loss in ridge regression
Models like LASSO and ridge regression are extensively used in practice due to their interpretability, ease of use, and strong theoretical guarantees. Crossvalidation (CV) is widely used for hyperparameter tuning in these models, but do practical optimization methods minimize the true out-of-sample loss? A recent line of research promises to show that the optimum of the CV loss matches the optimum of the out-of-sample loss (possibly after simple corrections). It remains to show how tractable it is to minimize the CV loss. In the present paper, we show that, in the case of ridge regression, the CV loss may fail to be quasiconvex and thus may have multiple local optima. We can guarantee that the CV loss is quasiconvex in at least one case: when the spectrum of the covariate matrix is nearly flat and the noise in the observed responses is not too high. More generally, we show that quasiconvexity status is independent of many properties of the observed data (response norm, covariate-matrix right singular vectors, and singular-value scaling) and has a complex dependence on the few that remain. We empirically confirm our theory using simulated experiments.
Experimental Setup
We provide an extended version of the Experimental Setup from Section 5 below. Linear Model This domain involves learning a linear model when the underlying mapping between features and predictions is cubic. Concretely, the aim is to choose the top B =1 out of N = 50 resources using a linear model. The fact that the features can be seen as 1-dimensional allows us to visualize the learned models (as seen in Figure 4). Predict: Given a feature xn U[0,1], use a linear model to predict the utility หyof choosing resource n, where the true utility is given by yn = 10x3n 6.5xn.
Regional Explanations: Bridging Local and Global Variable Importance
Amoukou, Salim I., Brunel, Nicolas J-B.
We analyze two widely used local attribution methods, Local Shapley Values and LIME, which aim to quantify the contribution of a feature value $x_i$ to a specific prediction $f(x_1, \dots, x_p)$. Despite their widespread use, we identify fundamental limitations in their ability to reliably detect locally important features, even under ideal conditions with exact computations and independent features. We argue that a sound local attribution method should not assign importance to features that neither influence the model output (e.g., features with zero coefficients in a linear model) nor exhibit statistical dependence with functionality-relevant features. We demonstrate that both Local SV and LIME violate this fundamental principle. To address this, we propose R-LOCO (Regional Leave Out COvariates), which bridges the gap between local and global explanations and provides more accurate attributions. R-LOCO segments the input space into regions with similar feature importance characteristics. It then applies global attribution methods within these regions, deriving an instance's feature contributions from its regional membership. This approach delivers more faithful local attributions while avoiding local explanation instability and preserving instance-specific detail often lost in global methods.
Inferring Change Points in Regression via Sample Weighting
Arpino, Gabriel, Venkataramanan, Ramji
We study the problem of identifying change points in high-dimensional generalized linear models, and propose an approach based on sample-weighted empirical risk minimization. Our method, Weighted ERM, encodes priors on the change points via weights assigned to each sample, to obtain weighted versions of standard estimators such as M-estimators and maximum-likelihood estimators. Under mild assumptions on the data, we obtain a precise asymptotic characterization of the performance of our method for general Gaussian designs, in the high-dimensional limit where the number of samples and covariate dimension grow proportionally. We show how this characterization can be used to efficiently construct a posterior distribution over change points. Numerical experiments on both simulated and real data illustrate the efficacy of Weighted ERM compared to existing approaches, demonstrating that sample weights constructed with weakly informative priors can yield accurate change point estimators. Our method is implemented as an open-source package, weightederm, available in Python and R.
Unified Precision-Guaranteed Stopping Rules for Contextual Learning
Ding, Mingrui, Zhao, Qiuhong, Gao, Siyang, Dong, Jing
Contextual learning seeks to learn a decision policy that maps an individual's characteristics to an action through data collection. In operations management, such data may come from various sources, and a central question is when data collection can stop while still guaranteeing that the learned policy is sufficiently accurate. We study this question under two precision criteria: a context-wise criterion and an aggregate policy-value criterion. We develop unified stopping rules for contextual learning with unknown sampling variances in both unstructured and structured linear settings. Our approach is based on generalized likelihood ratio (GLR) statistics for pairwise action comparisons. To calibrate the corresponding sequential boundaries, we derive new time-uniform deviation inequalities that directly control the self-normalized GLR evidence and thus avoid the conservativeness caused by decoupling mean and variance uncertainty. Under the Gaussian sampling model, we establish finite-sample precision guarantees for both criteria. Numerical experiments on synthetic instances and two case studies demonstrate that the proposed stopping rules achieve the target precision with substantially fewer samples than benchmark methods. The proposed framework provides a practical way to determine when enough information has been collected in personalized decision problems. It applies across multiple data-collection environments, including historical datasets, simulation models, and real systems, enabling practitioners to reduce unnecessary sampling while maintaining a desired level of decision quality.