lens function
Lens functions for exploring UMAP Projections with Domain Knowledge
Dimensionality reduction algorithms are often used to visualise high-dimensional data. Previously, studies have used prior information to enhance or suppress expected patterns in projections. In this paper, we adapt such techniques for domain knowledge guided interactive exploration. Inspired by Mapper and STAD, we present three types of lens functions for UMAP, a state-of-the-art dimensionality reduction algorithm. Lens functions enable analysts to adapt projections to their questions, revealing otherwise hidden patterns. They filter the modelled connectivity to explore the interaction between manually selected features and the data's structure, creating configurable perspectives each potentially revealing new insights. The effectiveness of the lens functions is demonstrated in two use cases and their computational cost is analysed in a synthetic benchmark.
$G$-Mapper: Learning a Cover in the Mapper Construction
Alvarado, Enrique, Belton, Robin, Fischer, Emily, Lee, Kang-Ju, Palande, Sourabh, Percival, Sarah, Purvine, Emilie
The Mapper algorithm is a visualization technique in topological data analysis (TDA) that outputs a graph reflecting the structure of a given dataset. The Mapper algorithm requires tuning several parameters in order to generate a "nice" Mapper graph. The paper focuses on selecting the cover parameter. We present an algorithm that optimizes the cover of a Mapper graph by splitting a cover repeatedly according to a statistical test for normality. Our algorithm is based on $G$-means clustering which searches for the optimal number of clusters in $k$-means by conducting iteratively the Anderson-Darling test. Our splitting procedure employs a Gaussian mixture model in order to choose carefully the cover based on the distribution of a given data. Experiments for synthetic and real-world datasets demonstrate that our algorithm generates covers so that the Mapper graphs retain the essence of the datasets.