This paper proposes StrEBM, a structured latent energy-based model for source-wise structured representation learning. The framework is motivated by a broader goal of promoting identifiable and decoupled latent organization by assigning different latent dimensions their own learnable structural biases, rather than constraining the entire latent representation with a single shared energy. In this sense, blind source separation is adopted here as a concrete and verifiable testbed, through which the evolution of latent dimensions toward distinct underlying components can be directly examined. In the proposed framework, latent trajectories are optimized directly together with an observation-generation map and source-wise structural parameters. Each latent dimension is associated with its own energy-based formulation, allowing different latent components to gradually evolve toward distinct source-like roles during training. In the present study, this source-wise energy design is instantiated using Gaussian-process-inspired energies with learnable length-scales, but the framework itself is not restricted to Gaussian processes and is intended as a more general structured latent EBM formulation. Experiments on synthetic multichannel signals under linear and nonlinear mixing settings show that the proposed model can recover source components effectively, providing an initial empirical validation of the framework. At the same time, the study reveals important optimization characteristics, including slow late-stage convergence and reduced stability under nonlinear observation mappings. These findings not only clarify the practical behavior of the current GP-based instantiation, but also establish a basis for future investigation of richer source-wise energy families and more robust nonlinear optimization strategies.

This paper presents a Structured Source-Wise Adaptive Diffusion Framework for linear and nonlinear blind source separation. The framework interprets each latent dimension as a source component and assigns to it an individual adaptive diffusion mechanism, thereby establishing source-wise latent modeling rather than relying on a single shared latent prior. The resulting formulation learns source recovery and the mixing/reconstruction process jointly within a unified end-to-end objective, allowing model parameters and latent sources to adapt simultaneously during training. This yields a common framework for both linear and nonlinear blind source separation. In the present instantiation, each source is further equipped with its own adaptive Gaussian process (GP) prior to impose source-wise temporal structure on the latent trajectories, while the overall framework is not restricted to Gaussian process priors and can in principle accommodate other structured source priors. The proposed model thus provides a general structured diffusion-based route to unsupervised source recovery, with potential relevance beyond blind source separation to interpretable latent modeling, source-wise disentanglement, and potentially identifiable nonlinear latent-variable learning under appropriate structural conditions.

We propose SAHMM-VAE, a source-wise adaptive Hidden Markov prior variational autoencoder for unsupervised blind source separation. Instead of treating the latent prior as a single generic regularizer, the proposed framework assigns each latent dimension its own adaptive regime-switching prior, so that different latent dimensions are pulled toward different source-specific temporal organizations during training. Under this formulation, source separation is not implemented as an external post-processing step; it is embedded directly into variational learning itself. The encoder, decoder, posterior parameters, and source-wise prior parameters are optimized jointly, where the encoder progressively learns an inference map that behaves like an approximate inverse of the mixing transformation, while the decoder plays the role of the generative mixing model. Through this coupled optimization, the gradual alignment between posterior source trajectories and heterogeneous HMM priors becomes the mechanism through which different latent dimensions separate into different source components. To instantiate this idea, we develop three branches within one common framework: a Gaussian-emission HMM prior, a Markov-switching autoregressive HMM prior, and an HMM state-flow prior with state-wise autoregressive flow transformations. Experiments show that the proposed framework achieves unsupervised source recovery while also learning meaningful source-wise switching structures. More broadly, the method extends our structured-prior VAE line from smooth, mixture-based, and flow-based latent priors to adaptive switching priors, and provides a useful basis for future work on interpretable and potentially identifiable latent source modeling.

Missing data is a ubiquitous challenge in data analysis, often leading to biased and inaccurate results. Traditional imputation methods usually assume that the missingness mechanism is missing-at-random (MAR), where the missingness is independent of the missing values themselves. This assumption is frequently violated in real-world scenarios, prompted by recent advances in imputation methods using deep learning to address this challenge. However, these methods neglect the crucial issue of nonparametric identifiability in missing-not-at-random (MNAR) data, which can lead to biased and unreliable results. This paper seeks to bridge this gap by proposing a novel framework based on deep latent variable models for MNAR data. Building on the assumption of conditional no self-censoring given latent variables, we establish the identifiability of the data distribution. This crucial theoretical result guarantees the feasibility of our approach. To effectively estimate unknown parameters, we develop an efficient algorithm utilizing importance-weighted autoencoders. We demonstrate, both theoretically and empirically, that our estimation process accurately recovers the ground-truth joint distribution under specific regularity conditions. Extensive simulation studies and real-world data experiments showcase the advantages of our proposed method compared to various classical and state-of-the-art approaches to missing data imputation.

Independent component analysis is a core framework within blind source separation for recovering latent source signals from observed mixtures under statistical independence assumptions. In this work, we propose PDGMM-VAE, a source-oriented variational autoencoder in which each latent dimension, interpreted explicitly as an individual source signal, is assigned its own Gaussian mixture model prior. Unlike conventional VAE formulations with a shared simple prior, the proposed framework imposes per-dimension heterogeneous prior constraints, enabling the model to capture diverse non-Gaussian source statistics and thereby promote source separation under a probabilistic encoder-decoder architecture. Importantly, the parameters of these per-dimension GMM priors are not fixed in advance, but are adaptively learned and automatically refined toward convergence together with the encoder and decoder parameters under the overall training objective. Within this formulation, the encoder serves as a demixing mapping from observations to latent sources, while the decoder reconstructs the observed mixtures from the inferred components. The proposed model provides a systematic study of an idea that had previously only been noted in our preliminary form, namely, equipping different latent sources with different GMM priors for ICA, and formulates it as a full VAE framework with end-to-end training and per-dimension prior learning. Experimental results on both linear and nonlinear mixing problems demonstrate that PDGMM-VAE can recover latent source signals and achieve satisfactory separation performance.

Thus, fMRI BOLD activity reflects an indirect, noisy measure ofneural activity,mismatched toneural timescales byseveral orders ofmagnitude.

For example, while prior work has suggested that theglobally optimal VAEsolution canlearn thecorrect manifold dimension, anecessary (butnotsufficient)condition forproducing samplesfrom the true data distribution, this has never been rigorously proven. Moreover, it remains unclear how such considerations would change when various types of conditioning variablesare introduced, or when the data support is extended to a union of manifolds (e.g., as is likely the case for MNIST digits and related). In this work, we address these points by first proving that VAE global minima are indeed capable of recovering the correct manifold dimension.

The embedding of such a manifold into the high-dimensional space of the data is achieved via learnable invertible transformations.