This paper presents a kernelized version of the t-SNE algorithm, capable of mapping high-dimensional data to a low-dimensional space while preserving the pairwise distances between the data points in a non-Euclidean metric. This can be achieved using a kernel trick only in the high dimensional space or in both spaces, leading to an end-to-end kernelized version. The proposed kernelized version of the t-SNE algorithm can offer new views on the relationships between data points, which can improve performance and accuracy in particular applications, such as classification problems involving kernel methods. The differences between t-SNE and its kernelized version are illustrated for several datasets, showing a neater clustering of points belonging to different classes.

We extend a well-known dimension reduction method, t-distributed stochastic neighbor embedding (t-SNE), from non-parametric to parametric by training neural networks. The main advantage of a parametric technique is the generalization of handling new data, which is particularly beneficial for streaming data exploration. However, training a neural network to optimize the t-SNE objective function frequently fails. Previous methods overcome this problem by pre-training and then fine-tuning the network. We found that the training failure comes from the gradient exploding problem, which occurs when data points distant in high-dimensional space are projected to nearby embedding positions. Accordingly, we applied the gradient clipping method to solve the problem. Since the networks are trained by directly optimizing the t-SNE objective function, our method achieves an embedding quality that is compatible with the non-parametric t-SNE while enjoying the ability of generalization. Due to mini-batch network training, our parametric dimension reduction method is highly efficient. We further extended other non-parametric state-of-the-art approaches, such as LargeVis and UMAP, to the parametric versions. Experiment results demonstrate the feasibility of our method. Considering its practicability, we will soon release the codes for public use.