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Transfer Learning to Detect COVID-19 Coughs with Incremental Addition of Patient Coughs to Healthy People's Cough Detection Models

arXiv.org Artificial Intelligence

Millions of people have died worldwide from COVID-19. In addition to its high death toll, COVID-19 has led to unbearable suffering for individuals and a huge global burden to the healthcare sector. Therefore, researchers have been trying to develop tools to detect symptoms of this human-transmissible disease remotely to control its rapid spread. Coughing is one of the common symptoms that researchers have been trying to detect objectively from smartphone microphone-sensing. While most of the approaches to detect and track cough symptoms rely on machine learning models developed from a large amount of patient data, this is not possible at the early stage of an outbreak. In this work, we present an incremental transfer learning approach that leverages the relationship between healthy peoples' coughs and COVID-19 patients' coughs to detect COVID-19 coughs with reasonable accuracy using a pre-trained healthy cough detection model and a relatively small set of patient coughs, reducing the need for large patient dataset to train the model. This type of model can be a game changer in detecting the onset of a novel respiratory virus.


Incorporating Dictionaries into a Neural Network Architecture to Extract COVID-19 Medical Concepts From Social Media

arXiv.org Artificial Intelligence

We investigate the potential benefit of incorporating dictionary information into a neural network architecture for natural language processing. In particular, we make use of this architecture to extract several concepts related to COVID-19 from an on-line medical forum. We use a sample from the forum to manually curate one dictionary for each concept. In addition, we use MetaMap, which is a tool for extracting biomedical concepts, to identify a small number of semantic concepts. For a supervised concept extraction task on the forum data, our best model achieved a macro $F_1$ score of 90\%. A major difficulty in medical concept extraction is obtaining labelled data from which to build supervised models. We investigate the utility of our models to transfer to data derived from a different source in two ways. First for producing labels via weak learning and second to perform concept extraction. The dataset we use in this case comprises COVID-19 related tweets and we achieve an $F_1$ score 81\% for symptom concept extraction trained on weakly labelled data. The utility of our dictionaries is compared with a COVID-19 symptom dictionary that was constructed directly from Twitter. Further experiments that incorporate BERT and a COVID-19 version of BERTweet demonstrate that the dictionaries provide a commensurate result. Our results show that incorporating small domain dictionaries to deep learning models can improve concept extraction tasks. Moreover, models built using dictionaries generalize well and are transferable to different datasets on a similar task.