heterogeneous graph transformer
Heterogeneous Graph Transformer for Multiple Tiny Object Tracking in RGB-T Videos
Xu, Qingyu, Wang, Longguang, Sheng, Weidong, Wang, Yingqian, Xiao, Chao, Ma, Chao, An, Wei
Tracking multiple tiny objects is highly challenging due to their weak appearance and limited features. Existing multi-object tracking algorithms generally focus on single-modality scenes, and overlook the complementary characteristics of tiny objects captured by multiple remote sensors. To enhance tracking performance by integrating complementary information from multiple sources, we propose a novel framework called {HGT-Track (Heterogeneous Graph Transformer based Multi-Tiny-Object Tracking)}. Specifically, we first employ a Transformer-based encoder to embed images from different modalities. Subsequently, we utilize Heterogeneous Graph Transformer to aggregate spatial and temporal information from multiple modalities to generate detection and tracking features. Additionally, we introduce a target re-detection module (ReDet) to ensure tracklet continuity by maintaining consistency across different modalities. Furthermore, this paper introduces the first benchmark VT-Tiny-MOT (Visible-Thermal Tiny Multi-Object Tracking) for RGB-T fused multiple tiny object tracking. Extensive experiments are conducted on VT-Tiny-MOT, and the results have demonstrated the effectiveness of our method. Compared to other state-of-the-art methods, our method achieves better performance in terms of MOTA (Multiple-Object Tracking Accuracy) and ID-F1 score. The code and dataset will be made available at https://github.com/xuqingyu26/HGTMT.
HGTDR: Advancing Drug Repurposing with Heterogeneous Graph Transformers
Gharizadeh, Ali, Abbasi, Karim, Ghareyazi, Amin, Mofrad, Mohammad R. K., Rabiee, Hamid R.
Motivation: Drug repurposing is a viable solution for reducing the time and cost associated with drug development. However, thus far, the proposed drug repurposing approaches still need to meet expectations. Therefore, it is crucial to offer a systematic approach for drug repurposing to achieve cost savings and enhance human lives. In recent years, using biological network-based methods for drug repurposing has generated promising results. Nevertheless, these methods have limitations. Primarily, the scope of these methods is generally limited concerning the size and variety of data they can effectively handle. Another issue arises from the treatment of heterogeneous data, which needs to be addressed or converted into homogeneous data, leading to a loss of information. A significant drawback is that most of these approaches lack end-to-end functionality, necessitating manual implementation and expert knowledge in certain stages. Results: We propose a new solution, HGTDR (Heterogeneous Graph Transformer for Drug Repurposing), to address the challenges associated with drug repurposing. HGTDR is a three-step approach for knowledge graph-based drug re-purposing: 1) constructing a heterogeneous knowledge graph, 2) utilizing a heterogeneous graph transformer network, and 3) computing relationship scores using a fully connected network. By leveraging HGTDR, users gain the ability to manipulate input graphs, extract information from diverse entities, and obtain their desired output. In the evaluation step, we demonstrate that HGTDR performs comparably to previous methods. Furthermore, we review medical studies to validate our method's top ten drug repurposing suggestions, which have exhibited promising results. We also demon-strated HGTDR's capability to predict other types of relations through numerical and experimental validation, such as drug-protein and disease-protein inter-relations.
DSHGT: Dual-Supervisors Heterogeneous Graph Transformer -- A pioneer study of using heterogeneous graph learning for detecting software vulnerabilities
Zhang, Tiehua, Xu, Rui, Zhang, Jianping, Tian, Yuzhe, Chen, Xin, Huang, Xiaowei, Yin, Jun, Zheng, Xi
Vulnerability detection is a critical problem in software security and attracts growing attention both from academia and industry. Traditionally, software security is safeguarded by designated rule-based detectors that heavily rely on empirical expertise, requiring tremendous effort from software experts to generate rule repositories for large code corpus. Recent advances in deep learning, especially Graph Neural Networks (GNN), have uncovered the feasibility of automatic detection of a wide range of software vulnerabilities. However, prior learning-based works only break programs down into a sequence of word tokens for extracting contextual features of codes, or apply GNN largely on homogeneous graph representation (e.g., AST) without discerning complex types of underlying program entities (e.g., methods, variables). In this work, we are one of the first to explore heterogeneous graph representation in the form of Code Property Graph and adapt a well-known heterogeneous graph network with a dual-supervisor structure for the corresponding graph learning task. Using the prototype built, we have conducted extensive experiments on both synthetic datasets and real-world projects. Compared with the state-of-the-art baselines, the results demonstrate promising effectiveness in this research direction in terms of vulnerability detection performance (average F1 improvements over 10\% in real-world projects) and transferability from C/C++ to other programming languages (average F1 improvements over 11%).
Entity Alignment with Reliable Path Reasoning and Relation-Aware Heterogeneous Graph Transformer
Cai, Weishan, Ma, Wenjun, Zhan, Jieyu, Jiang, Yuncheng
Entity Alignment (EA) has attracted widespread attention in both academia and industry, which aims to seek entities with same meanings from different Knowledge Graphs (KGs). There are substantial multi-step relation paths between entities in KGs, indicating the semantic relations of entities. However, existing methods rarely consider path information because not all natural paths facilitate for EA judgment. In this paper, we propose a more effective entity alignment framework, RPR-RHGT, which integrates relation and path structure information, as well as the heterogeneous information in KGs. Impressively, an initial reliable path reasoning algorithm is developed to generate the paths favorable for EA task from the relation structures of KGs, which is the first algorithm in the literature to successfully use unrestricted path information. In addition, to efficiently capture heterogeneous features in entity neighborhoods, a relation-aware heterogeneous graph transformer is designed to model the relation and path structures of KGs. Extensive experiments on three well-known datasets show RPR-RHGT significantly outperforms 11 state-of-the-art methods, exceeding the best performing baseline up to 8.62% on Hits@1. We also show its better performance than the baselines on different ratios of training set, and harder datasets.
Heterogeneous Graph Transformer
Hu, Ziniu, Dong, Yuxiao, Wang, Kuansan, Sun, Yizhou
Recent years have witnessed the emerging success of graph neural networks (GNNs) for modeling structured data. However, most GNNs are designed for homogeneous graphs, in which all nodes and edges belong to the same types, making them infeasible to represent heterogeneous structures. In this paper, we present the Heterogeneous Graph Transformer (HGT) architecture for modeling Web-scale heterogeneous graphs. To model heterogeneity, we design node- and edge-type dependent parameters to characterize the heterogeneous attention over each edge, empowering HGT to maintain dedicated representations for different types of nodes and edges. To handle dynamic heterogeneous graphs, we introduce the relative temporal encoding technique into HGT, which is able to capture the dynamic structural dependency with arbitrary durations. To handle Web-scale graph data, we design the heterogeneous mini-batch graph sampling algorithm---HGSampling---for efficient and scalable training. Extensive experiments on the Open Academic Graph of 179 million nodes and 2 billion edges show that the proposed HGT model consistently outperforms all the state-of-the-art GNN baselines by 9%--21% on various downstream tasks.