Goto

Collaborating Authors

 growth pattern


Deep-SITAR: A SITAR-Based Deep Learning Framework for Growth Curve Modeling via Autoencoders

arXiv.org Machine Learning

Several approaches have been developed to capture the complexity and nonlinearity of human growth. One widely used is the Super Imposition by Translation and Rotation (SITAR) model, which has become popular in studies of adolescent growth. SITAR is a shape-invariant mixed-effects model that represents the shared growth pattern of a population using a natural cubic spline mean curve while incorporating three subject-specific random effects -- timing, size, and growth intensity -- to account for variations among individuals. In this work, we introduce a supervised deep learning framework based on an autoencoder architecture that integrates a deep neural network (neural network) with a B-spline model to estimate the SITAR model. In this approach, the encoder estimates the random effects for each individual, while the decoder performs a fitting based on B-splines similar to the classic SITAR model. We refer to this method as the Deep-SITAR model. This innovative approach enables the prediction of the random effects of new individuals entering a population without requiring a full model re-estimation. As a result, Deep-SITAR offers a powerful approach to predicting growth trajectories, combining the flexibility and efficiency of deep learning with the interpretability of traditional mixed-effects models.


Insights into dendritic growth mechanisms in batteries: A combined machine learning and computational study

arXiv.org Artificial Intelligence

In recent years, researchers have increasingly sought batteries as an efficient and cost-effective solution for energy storage and supply, owing to their high energy density, low cost, and environmental resilience. However, the issue of dendrite growth has emerged as a significant obstacle in battery development. Excessive dendrite growth during charging and discharging processes can lead to battery short-circuiting, degradation of electrochemical performance, reduced cycle life, and abnormal exothermic events. Consequently, understanding the dendrite growth process has become a key challenge for researchers. In this study, we investigated dendrite growth mechanisms in batteries using a combined machine learning approach, specifically a two-dimensional artificial convolutional neural network (CNN) model, along with computational methods. We developed two distinct computer models to predict dendrite growth in batteries. The CNN-1 model employs standard convolutional neural network techniques for dendritic growth prediction, while CNN-2 integrates additional physical parameters to enhance model robustness. Our results demonstrate that CNN-2 significantly enhances prediction accuracy, offering deeper insights into the impact of physical factors on dendritic growth. This improved model effectively captures the dynamic nature of dendrite formation, exhibiting high accuracy and sensitivity. These findings contribute to the advancement of safer and more reliable energy storage systems.


Growth Patterns of Inference

arXiv.org Artificial Intelligence

What properties of a first-order search space support/hinder inference? What kinds of facts would be most effective to learn? Answering these questions is essential for understanding the dynamics of deductive reasoning and creating large-scale knowledge-based learning systems that support efficient inference. We address these questions by developing a model of how the distribution of ground facts affects inference performance in search spaces. Experiments suggest that uniform search spaces are suitable for larger KBs whereas search spaces with skewed degree distribution show better performance in smaller KBs. A sharp transition in Q/A performance is seen in some cases, suggesting that analysis of the structure of search spaces with existing knowledge should be used to guide the acquisition of new ground facts in learning systems.


Cell Maps Representation For Lung Adenocarcinoma Growth Patterns Classification In Whole Slide Images

arXiv.org Artificial Intelligence

Lung adenocarcinoma is a morphologically heterogeneous disease, characterized by five primary histologic growth patterns. The quantity of these patterns can be related to tumor behavior and has a significant impact on patient prognosis. In this work, we propose a novel machine learning pipeline capable of classifying tissue tiles into one of the five patterns or as non-tumor, with an Area Under the Receiver Operating Characteristic Curve (AUCROC) score of 0.97. Our model's strength lies in its comprehensive consideration of cellular spatial patterns, where it first generates cell maps from Hematoxylin and Eosin (H&E) whole slide images (WSIs), which are then fed into a convolutional neural network classification model. Exploiting these cell maps provides the model with robust generalizability to new data, achieving approximately 30% higher accuracy on unseen test-sets compared to current state of the art approaches. The insights derived from our model can be used to predict prognosis, enhancing patient outcomes.


Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides

arXiv.org Artificial Intelligence

Definitive cancer diagnosis and management depend upon the extraction of information from microscopy images by pathologists. These images contain complex information requiring time-consuming expert human interpretation that is prone to human bias. Supervised deep learning approaches have proven powerful for classification tasks, but they are inherently limited by the cost and quality of annotations used for training these models. To address this limitation of supervised methods, we developed Histomorphological Phenotype Learning (HPL), a fully blue{self-}supervised methodology that requires no expert labels or annotations and operates via the automatic discovery of discriminatory image features in small image tiles. Tiles are grouped into morphologically similar clusters which constitute a library of histomorphological phenotypes, revealing trajectories from benign to malignant tissue via inflammatory and reactive phenotypes. These clusters have distinct features which can be identified using orthogonal methods, linking histologic, molecular and clinical phenotypes. Applied to lung cancer tissues, we show that they align closely with patient survival, with histopathologically recognised tumor types and growth patterns, and with transcriptomic measures of immunophenotype. We then demonstrate that these properties are maintained in a multi-cancer study. These results show the clusters represent recurrent host responses and modes of tumor growth emerging under natural selection. Code, pre-trained models, learned embeddings, and documentation are available to the community at https://github.com/AdalbertoCq/Histomorphological-Phenotype-Learning


Agriculture of the future: neural networks have learned to predict plant growth

#artificialintelligence

Scientists from Skoltech have trained neural networks to evaluate and predict the plant growth pattern taking into account the main influencing factors and propose the optimal ratio between the nutrient requirements and other growth-driving parameters. The results of the study were published in the IEEE journal Transactions on Instrumentations and Measurements. Over the past few years, multiple attempts have been made to use artificial intelligence (AI) in nearly all spheres of life. It has proven useful, helping people to make the right decisions and achieve the goal. Using AI to grow plants in artificial environments is no exception.


shaping-animal-vegetable-and-mineral

Robohub

Nature has a way of making complex shapes from a set of simple growth rules. The curve of a petal, the swoop of a branch, even the contours of our face are shaped by these processes. What if we could unlock those rules and reverse engineer nature's ability to grow an infinitely diverse array of shapes? Scientists from Harvard's Wyss Institute for Biologically Inspired Engineering and the Harvard John A. Paulson School of Engineering and Applied Sciences (SEAS) have done just that. In a paper published in the Proceedings of the National Academy of Sciences, the team demonstrates a technique to grow any target shape from any starting shape.