Graph Edit Distance (GED) offers a principled and flexible measure of graph similarity, as it quantifies the minimum cost needed to transform one graph into another with customizable edit operation costs. Despite recent learning-based efforts to approximate GED via vector space representations, existing methods struggle with adapting to varying operation costs. Furthermore, they suffer from inefficient, reactive mapping refinements due to reliance on isolated node-level distance as guidance. To address these issues, we propose GEN, a novel learning-based approach for flexible GED approximation. GEN addresses the varying costs adaptation by integrating operation costs prior to match establishment, enabling mappings to dynamically adapt to cost variations. Furthermore, GEN introduces a proactive guidance optimization strategy that captures graph-level dependencies between matches, allowing informed matching decisions in a single step without costly iterative refinements. Extensive evaluations on real-world and synthetic datasets demonstrate that GEN achieves up to 37.8% reduction in GED approximation error and 72.7% reduction in inference time compared with state-of-the-art methods, while consistently maintaining robustness under diverse cost settings and graph sizes.

Given a graph pair $(G^1, G^2)$, graph edit distance (GED) is defined as the minimum number of edit operations converting $G^1$ to $G^2$. GED is a fundamental operation widely used in many applications, but its exact computation is NP-hard, so the approximation of GED has gained a lot of attention. Data-driven learning-based methods have been found to provide superior results compared to classical approximate algorithms, but they directly fit the coupling relationship between a pair of vertices from their vertex features. We argue that while pairwise vertex features can capture the coupling cost (discrepancy) of a pair of vertices, the vertex coupling matrix should be derived from the vertex-pair cost matrix through a more well-established method that is aware of the global context of the graph pair, such as optimal transport. In this paper, we propose an ensemble approach that integrates a supervised learning-based method and an unsupervised method, both based on optimal transport. Our learning method, GEDIOT, is based on inverse optimal transport that leverages a learnable Sinkhorn algorithm to generate the coupling matrix. Our unsupervised method, GEDGW, models GED computation as a linear combination of optimal transport and its variant, Gromov-Wasserstein discrepancy, for node and edge operations, respectively, which can be solved efficiently without needing the ground truth. Our ensemble method, GEDHOT, combines GEDIOT and GEDGW to further boost the performance. Extensive experiments demonstrate that our methods significantly outperform the existing methods in terms of the performance of GED computation, edit path generation, and model generalizability.

Graph Edit Distance (GED) is a general and domain-agnostic metric to measure graph similarity, widely used in graph search or retrieving tasks. However, the exact GED computation is known to be NP-complete. For instance, the widely used A* algorithms explore the entire search space to find the optimal solution which inevitably suffers scalability issues. Learning-based methods apply graph representation techniques to learn the GED by formulating a regression task, which can not recover the edit path and lead to inaccurate GED approximation (i.e., the predicted GED is smaller than the exact). To this end, in this work, we present a data-driven hybrid approach MATA* for approximate GED computation based on Graph Neural Networks (GNNs) and A* algorithms, which models from the perspective of learning to match nodes instead of directly regressing GED. Specifically, aware of the structure-dominant operations (i.e.,node and edge insertion/deletion) property in GED computation, a structure-enhanced GNN is firstly designed to jointly learn local and high-order structural information for node embeddings for node matchings. Second, top-k candidate nodes are produced via a differentiable top-k operation to enable the training for node matchings, which is adhering to another property of GED, i.e., multiple optimal node matchings. Third, benefiting from the candidate nodes, MATA* only performs on the promising search directions, reaching the solution efficiently. Finally, extensive experiments show the superiority of MATA* as it significantly outperforms the combinatorial search-based, learning-based and hybrid methods and scales well to large-size graphs.

Graph Edit Distance (GED) computation is a core operation of many widely-used graph applications, such as graph classification, graph matching, and graph similarity search. However, computing the exact GED between two graphs is NP-complete. Most current approximate algorithms are based on solving a combinatorial optimization problem, which involves complicated design and high time complexity. In this paper, we propose a novel end-to-end neural network based approach to GED approximation, aiming to alleviate the computational burden while preserving good performance. The proposed approach, named GSimCNN, turns GED computation into a learning problem. Each graph is considered as a set of nodes, represented by learnable embedding vectors. The GED computation is then considered as a two-set matching problem, where a higher matching score leads to a lower GED. A Convolutional Neural Network (CNN) based approach is proposed to tackle the set matching problem. We test our algorithm on three real graph datasets, and our model achieves significant performance enhancement against state-of-the-art approximate GED computation algorithms.