Current knowledge-enhanced large language models (LLMs) rely on static, pre-constructed knowledge bases that suffer from coverage gaps and temporal obsolescence, limiting their effectiveness in dynamic information environments. We present Agentic-KGR, a novel framework enabling co-evolution between LLMs and knowledge graphs (KGs) through multi-round reinforcement learning (RL). Our approach introduces three key innovations: (1) a dynamic schema expansion mechanism that systematically extends graph ontologies beyond pre-defined boundaries during training; (2) a retrieval-augmented memory system enabling synergistic co-evolution between model parameters and knowledge structures through continuous optimization; (3) a learnable multi-scale prompt compression approach that preserves critical information while reducing computational complexity through adaptive sequence optimization. Experimental results demonstrate substantial improvements over supervised baselines and single-round RL approaches in knowledge extraction tasks. When integrated with GraphRAG, our method achieves superior performance in downstream QA tasks, with significant gains in both accuracy and knowledge coverage compared to existing methods.

The relation extraction (RE) in complex scenarios faces challenges such as diverse relation types and ambiguous relations between entities within a single sentence, leading to the poor performance of pure "text-in, text-out" language models (LMs). To address these challenges, in this paper, we propose an agent-based RE framework, namely AgentRE, which fully leverages the potential of large language models (LLMs) including memory, retrieval and reflection, to achieve RE in complex scenarios. Specifically, three major modules are built in AgentRE serving as the tools to help the agent acquire and process various useful information, thereby obtaining improved RE performance. Our extensive experimental results upon two datasets in English and Chinese demonstrate our AgentRE's superior performance, especially in low-resource scenarios. Additionally, the trajectories generated by AgentRE can be refined to construct a high-quality training dataset incorporating different reasoning methods, which can be used to fine-tune smaller models. Code is available at https://github.com/Lightblues/AgentRE.

Existing research on large language models (LLMs) shows that they can solve information extraction tasks through multi-step planning. However, their extraction behavior on complex sentences and tasks is unstable, emerging issues such as false positives and missing elements. We observe that decomposing complex extraction tasks and extracting them step by step can effectively improve LLMs' performance, and the extraction orders of entities significantly affect the final results of LLMs. This paper proposes a two-stage multi-step method for LLM-based information extraction and adopts the RL framework to execute the multi-step planning. We regard sequential extraction as a Markov decision process, build an LLM-based extraction environment, design a decision module to adaptively provide the optimal order for sequential entity extraction on different sentences, and utilize the DDQN algorithm to train the decision model. We also design the rewards and evaluation metrics suitable for the extraction results of LLMs. We conduct extensive experiments on multiple public datasets to demonstrate the effectiveness of our method in improving the information extraction capabilities of LLMs.

Relation triple extraction, which outputs a set of triples from long sentences, plays a vital role in knowledge acquisition. Large language models can accurately extract triples from simple sentences through few-shot learning or fine-tuning when given appropriate instructions. However, they often miss out when extracting from complex sentences. In this paper, we design an evaluation-filtering framework that integrates large language models with small models for relational triple extraction tasks. The framework includes an evaluation model that can extract related entity pairs with high precision. We propose a simple labeling principle and a deep neural network to build the model, embedding the outputs as prompts into the extraction process of the large model. We conduct extensive experiments to demonstrate that the proposed method can assist large language models in obtaining more accurate extraction results, especially from complex sentences containing multiple relational triples. Our evaluation model can also be embedded into traditional extraction models to enhance their extraction precision from complex sentences.

Objectives: Our objective is to create an end-to-end system called AutoRD, which automates extracting information from clinical text about rare diseases. We have conducted various tests to evaluate the performance of AutoRD and highlighted its strengths and limitations in this paper. Materials and Methods: Our system, AutoRD, is a software pipeline involving data preprocessing, entity extraction, relation extraction, entity calibration, and knowledge graph construction. We implement this using large language models and medical knowledge graphs developed from open-source medical ontologies. We quantitatively evaluate our system on entity extraction, relation extraction, and the performance of knowledge graph construction. Results: AutoRD achieves an overall F1 score of 47.3%, a 14.4% improvement compared to the base LLM. In detail, AutoRD achieves an overall entity extraction F1 score of 56.1% (rare_disease: 83.5%, disease: 35.8%, symptom_and_sign: 46.1%, anaphor: 67.5%) and an overall relation extraction F1 score of 38.6% (produces: 34.7%, increases_risk_of: 12.4%, is_a: 37.4%, is_acronym: 44.1%, is_synonym: 16.3%, anaphora: 57.5%). Our qualitative experiment also demonstrates that the performance in constructing the knowledge graph is commendable. Discussion: AutoRD demonstrates the potential of LLM applications in rare disease detection. This improvement is attributed to several design, including the integration of ontologies-enhanced LLMs. Conclusion: AutoRD is an automated end-to-end system for extracting rare disease information from text to build knowledge graphs. It uses ontologies-enhanced LLMs for a robust medical knowledge base. The superior performance of AutoRD is validated by experimental evaluations, demonstrating the potential of LLMs in healthcare.

With the advent of large language models (LLMs), there has been growing interest in exploring their potential for medical applications. This research aims to investigate the ability of LLMs, specifically ChatGPT, in the context of pharmacovigilance event extraction, of which the main goal is to identify and extract adverse events or potential therapeutic events from textual medical sources. We conduct extensive experiments to assess the performance of ChatGPT in the pharmacovigilance event extraction task, employing various prompts and demonstration selection strategies. The findings demonstrate that while ChatGPT demonstrates reasonable performance with appropriate demonstration selection strategies, it still falls short compared to fully fine-tuned small models. Additionally, we explore the potential of leveraging ChatGPT for data augmentation. However, our investigation reveals that the inclusion of synthesized data into fine-tuning may lead to a decrease in performance, possibly attributed to noise in the ChatGPT-generated labels. To mitigate this, we explore different filtering strategies and find that, with the proper approach, more stable performance can be achieved, although constant improvement remains elusive.

Measurement of locked mode (LM) is important for the physical research of Magnetohydrodynamic (MHD) instabilities and plasma disruption. The n = 0 pick-up need to be extracted and subtracted to calculate the amplitude and phase of the LM. A new method to extract this pick-up has been developed by predicting the n = 0 pick-up brn=0 by the LM detectors based on Neural Networks (NNs) in J-TEXT. An approach called Power Multiple Time Scale (PMTS) has been developed with outstanding regressing effect in multiple frequency ranges. Three models have been progressed based on PMTS NNs. PMTS could fit the brn=0 on the LM detectors with little errors both in time domain and frequency domain. The n>0 pick-up brn>0 generated by resonant magnetic perturbations (RMPs) can be obtained after subtracting the extracted brn=0. This new method uses only one LM instead of 4 LM detectors to extract brn=0. Therefore, the distribution of the LM detectors can also be optimized based on this new method.

Electronic health records contain an enormous amount of valuable information, but many are recorded in free text. Information extraction is the strategy to transform the sequence of characters into structured data, which can be employed for secondary analysis. However, the traditional information extraction components, such as named entity recognition and relation extraction, require annotated data to optimize the model parameters, which has become one of the major bottlenecks in building information extraction systems. With the large language models achieving good performances on various downstream NLP tasks without parameter tuning, it becomes possible to use large language models for zero-shot information extraction. In this study, we aim to explore whether the most popular large language model, ChatGPT, can extract useful information from the radiological reports. We first design the prompt template for the interested information in the CT reports. Then, we generate the prompts by combining the prompt template with the CT reports as the inputs of ChatGPT to obtain the responses. A post-processing module is developed to transform the responses into structured extraction results. We conducted the experiments with 847 CT reports collected from Peking University Cancer Hospital. The experimental results indicate that ChatGPT can achieve competitive performances for some extraction tasks compared with the baseline information extraction system, but some limitations need to be further improved.

Information extraction (IE) has been studied extensively. The existing methods always follow a fixed extraction order for complex IE tasks with multiple elements to be extracted in one instance such as event extraction. However, we conduct experiments on several complex IE datasets and observe that different extraction orders can significantly affect the extraction results for a great portion of instances, and the ratio of sentences that are sensitive to extraction orders increases dramatically with the complexity of the IE task. Therefore, this paper proposes a novel adaptive ordered IE paradigm to find the optimal element extraction order for different instances, so as to achieve the best extraction results. We also propose an reinforcement learning (RL) based framework to generate optimal extraction order for each instance dynamically. Additionally, we propose a co-training framework adapted to RL to mitigate the exposure bias during the extractor training phase. Extensive experiments conducted on several public datasets demonstrate that our proposed method can beat previous methods and effectively improve the performance of various IE tasks, especially for complex ones.

Hyperspectral pixel intensities result from a mixing of reflectances from several materials. This paper develops a method of hyperspectral pixel unmixing that aims to recover the "pure" spectral signal of each material (hereafter referred to as endmembers) together with the mixing ratios (abundances) given the spectrum of a single pixel. The unmixing problem is particularly relevant in the case of low-resolution hyperspectral images captured in a remote sensing setting, where individual pixels can cover large regions of the scene. Under the assumptions that (1) a multivariate Normal distribution can represent the spectra of an endmember and (2) a Dirichlet distribution can encode abundances of different endmembers, we develop a Latent Dirichlet Variational Autoencoder for hyperspectral pixel unmixing. Our approach achieves state-of-the-art results on standard benchmarks and on synthetic data generated using United States Geological Survey spectral library.