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Enhancing AI Accessibility in Veterinary Medicine: Linking Classifiers and Electronic Health Records

arXiv.org Artificial Intelligence

Background: In the rapidly evolving landscape of veterinary healthcare, integrating machine learning (ML) clinical decision-making tools with electronic health records (EHRs) promises to improve diagnostic accuracy and patient care. However, the seamless integration of ML classifiers into existing EHRs in veterinary medicine is frequently hindered by the rigidity of EHR systems or the limited availability of IT resources. Results: To address this shortcoming, we present Anna, a freely-available software solution that provides ML classifier results for EHR laboratory data in real-time. Anna is a standalone platform developed in Python, designed to host ML classifiers, retrieve patient-specific data from an EHR system, generate classifier results and return these results to the EHR for display. Anna merges results from different diagnostic tests according to user-defined temporal criteria and determines whether the data are sufficient for a given classifier. Because Anna is a stand-alone platform, it does not require substantial modifications to the existing EHR, allowing for easy integration into existing computing infrastructure. To demonstrate Anna's versatility, we implemented three previously published ML classifiers to predict a diagnosis of hypoadrenocorticism, leptospirosis, or a portosystemic shunt in dogs. Conclusion: Anna is an open-source tool designed to improve the accessibility of ML classifiers for the veterinary community. Its flexible architecture supports the integration of classifiers developed in various programming languages and with diverse environment requirements.


A Global Medical Data Security and Privacy Preserving Standards Identification Framework for Electronic Healthcare Consumers

arXiv.org Artificial Intelligence

Electronic Health Records (EHR) are crucial for the success of digital healthcare, with a focus on putting consumers at the center of this transformation. However, the digitalization of healthcare records brings along security and privacy risks for personal data. The major concern is that different countries have varying standards for the security and privacy of medical data. This paper proposed a novel and comprehensive framework to standardize these rules globally, bringing them together on a common platform. To support this proposal, the study reviews existing literature to understand the research interest in this issue. It also examines six key laws and standards related to security and privacy, identifying twenty concepts. The proposed framework utilized K-means clustering to categorize these concepts and identify five key factors. Finally, an Ordinal Priority Approach is applied to determine the preferred implementation of these factors in the context of EHRs. The proposed study provides a descriptive then prescriptive framework for the implementation of privacy and security in the context of electronic health records. Therefore, the findings of the proposed framework are useful for professionals and policymakers in improving the security and privacy associated with EHRs.


EHRFL: Federated Learning Framework for Heterogeneous EHRs and Precision-guided Selection of Participating Clients

arXiv.org Artificial Intelligence

In this study, we provide solutions to two practical yet overlooked scenarios in federated learning for electronic health records (EHRs): firstly, we introduce EHRFL, a framework that facilitates federated learning across healthcare institutions with distinct medical coding systems and database schemas using text-based linearization of EHRs. Secondly, we focus on a scenario where a single healthcare institution initiates federated learning to build a model tailored for itself, in which the number of clients must be optimized in order to reduce expenses incurred by the host. For selecting participating clients, we present a novel precision-based method, leveraging data latents to identify suitable participants for the institution. Our empirical results show that EHRFL effectively enables federated learning across hospitals with different EHR systems. Furthermore, our results demonstrate the efficacy of our precision-based method in selecting reduced number of participating clients without compromising model performance, resulting in lower operational costs when constructing institution-specific models. We believe this work lays a foundation for the broader adoption of federated learning on EHRs.


GenHPF: General Healthcare Predictive Framework with Multi-task Multi-source Learning

arXiv.org Artificial Intelligence

Despite the remarkable progress in the development of predictive models for healthcare, applying these algorithms on a large scale has been challenging. Algorithms trained on a particular task, based on specific data formats available in a set of medical records, tend to not generalize well to other tasks or databases in which the data fields may differ. To address this challenge, we propose General Healthcare Predictive Framework (GenHPF), which is applicable to any EHR with minimal preprocessing for multiple prediction tasks. GenHPF resolves heterogeneity in medical codes and schemas by converting EHRs into a hierarchical textual representation while incorporating as many features as possible. To evaluate the efficacy of GenHPF, we conduct multi-task learning experiments with single-source and multi-source settings, on three publicly available EHR datasets with different schemas for 12 clinically meaningful prediction tasks. Our framework significantly outperforms baseline models that utilize domain knowledge in multi-source learning, improving average AUROC by 1.2%P in pooled learning and 2.6%P in transfer learning while also showing comparable results when trained on a single EHR dataset. Furthermore, we demonstrate that self-supervised pretraining using multi-source datasets is effective when combined with GenHPF, resulting in a 0.6%P AUROC improvement compared to models without pretraining. By eliminating the need for preprocessing and feature engineering, we believe that this work offers a solid framework for multi-task and multi-source learning that can be leveraged to speed up the scaling and usage of predictive algorithms in healthcare.


Interoperable synthetic health data with SyntHIR to enable the development of CDSS tools

arXiv.org Artificial Intelligence

There is a great opportunity to use high-quality patient journals and health registers to develop machine learning-based Clinical Decision Support Systems (CDSS). To implement a CDSS tool in a clinical workflow, there is a need to integrate, validate and test this tool on the Electronic Health Record (EHR) systems used to store and manage patient data. However, it is often not possible to get the necessary access to an EHR system due to legal compliance. We propose an architecture for generating and using synthetic EHR data for CDSS tool development. The architecture is implemented in a system called SyntHIR. The SyntHIR system uses the Fast Healthcare Interoperability Resources (FHIR) standards for data interoperability, the Gretel framework for generating synthetic data, the Microsoft Azure FHIR server as the FHIR-based EHR system and SMART on FHIR framework for tool transportability. We demonstrate the usefulness of SyntHIR by developing a machine learning-based CDSS tool using data from the Norwegian Patient Register (NPR) and Norwegian Patient Prescriptions (NorPD). We demonstrate the development of the tool on the SyntHIR system and then lift it to the Open DIPS environment. In conclusion, SyntHIR provides a generic architecture for CDSS tool development using synthetic FHIR data and a testing environment before implementing it in a clinical setting. However, there is scope for improvement in terms of the quality of the synthetic data generated. The code is open source and available at https://github.com/potter-coder89/SyntHIR.git.


HIMSS 2023: Epic, Microsoft bring OpenAI's GPT-4 to EHRs

#artificialintelligence

HIMSS 2023 kicked off Monday in Chicago. Follow our live blog for the latest updates and happenings from the conference. Epic Systems is working with Microsoft to integrate generative AI technology into its electronic health record software for the first time, the companies said Monday. The announcement was made in conjunction with the first day of the HIMSS conference, which is being held in Chicago this week. Health systems using Epic's EHR system will be able to run generative AI solutions through Microsoft's OpenAI Azure Service.


Redesigning Electronic Health Record Systems to Support Developing Countries

arXiv.org Artificial Intelligence

Electronic Health Record (EHR) has become an essential tool in the healthcare ecosystem, providing authorized clinicians with patients' health-related information for better treatment. While most developed countries are taking advantage of EHRs to improve their healthcare system, it remains challenging in developing countries to support clinical decision-making and public health using a computerized patient healthcare information system. This paper proposes a novel EHR architecture suitable for developing countries--an architecture that fosters inclusion and provides solutions tailored to all social classes and socioeconomic statuses. Our architecture foresees an internet-free (offline) solution to allow medical transactions between healthcare organizations, and the storage of EHRs in geographically underserved and rural areas. Moreover, we discuss how artificial intelligence can leverage anonymous health-related information to enable better public health policy and surveillance.


Universal EHR Federated Learning Framework

arXiv.org Artificial Intelligence

Federated learning (FL) is the most practical multi-source learning method for electronic healthcare records (EHR). Despite its guarantee of privacy protection, the wide application of FL is restricted by two large challenges: the heterogeneous EHR systems, and the non-i.i.d. data characteristic. A recent research proposed a framework that unifies heterogeneous EHRs, named UniHPF. We attempt to address both the challenges simultaneously by combining UniHPF and FL. Our study is the first approach to unify heterogeneous EHRs into a single FL framework. This combination provides an average of 3.4% performance gain compared to local learning. We believe that our framework is practically applicable in the real-world FL.


Decentralized Machine Learning for Intelligent Health Care Systems on the Computing Continuum

arXiv.org Artificial Intelligence

The introduction of electronic personal health records (EHR) enables nationwide information exchange and curation among different health care systems. However, the current EHR systems do not provide transparent means for diagnosis support, medical research or can utilize the omnipresent data produced by the personal medical devices. Besides, the EHR systems are centrally orchestrated, which could potentially lead to a single point of failure. Therefore, in this article, we explore novel approaches for decentralizing machine learning over distributed ledgers to create intelligent EHR systems that can utilize information from personal medical devices for improved knowledge extraction. Consequently, we proposed and evaluated a conceptual EHR to enable anonymous predictive analysis across multiple medical institutions. The evaluation results indicate that the decentralized EHR can be deployed over the computing continuum with reduced machine learning time of up to 60% and consensus latency of below 8 seconds.


Sex Trouble: Common pitfalls in incorporating sex/gender in medical machine learning and how to avoid them

arXiv.org Artificial Intelligence

False assumptions about sex and gender are deeply embedded in the medical system, including that they are binary, static, and concordant. Machine learning researchers must understand the nature of these assumptions in order to avoid perpetuating them. In this perspectives piece, we identify three common mistakes that researchers make when dealing with sex/gender data: "sex confusion", the failure to identity what sex in a dataset does or doesn't mean; "sex obsession", the belief that sex, specifically sex assigned at birth, is the relevant variable for most applications; and "sex/gender slippage", the conflation of sex and gender even in contexts where only one or the other is known. We then discuss how these pitfalls show up in machine learning studies based on electronic health record data, which is commonly used for everything from retrospective analysis of patient outcomes to the development of algorithms to predict risk and administer care. Finally, we offer a series of recommendations about how machine learning researchers can produce both research and algorithms that more carefully engage with questions of sex/gender, better serving all patients, including transgender people.