Functional Magnetic Resonance Imaging (fMRI) is an imaging technique widely used to study human brain activity. fMRI signals in areas across the brain transiently synchronise and desynchronise their activity in a highly structured manner, even when an individual is at rest. These functional connectivity dynamics may be related to behaviour and neuropsychiatric disease. To model these dynamics, temporal brain connectivity representations are essential, as they reflect evolving interactions between brain regions and provide insight into transient neural states and network reconfigurations. However, conventional graph neural networks (GNNs) often struggle to capture long-range temporal dependencies in dynamic fMRI data. To address this challenge, we propose BrainATCL, an unsupervised, nonparametric framework for adaptive temporal brain connectivity learning, enabling functional link prediction and age estimation. Our method dynamically adjusts the lookback window for each snapshot based on the rate of newly added edges. Graph sequences are subsequently encoded using a GINE-Mamba2 backbone to learn spatial-temporal representations of dynamic functional connectivity in resting-state fMRI data of 1,000 participants from the Human Connectome Project. To further improve spatial modeling, we incorporate brain structure and function-informed edge attributes, i.e., the left/right hemispheric identity and subnetwork membership of brain regions, enabling the model to capture biologically meaningful topological patterns. We evaluate our BrainATCL on two tasks: functional link prediction and age estimation. The experimental results demonstrate superior performance and strong generalization, including in cross-session prediction scenarios.

Abstract-- The movements of both animals and robots give rise to streams of high-dimensional motor and sensory information. Imagine the brain of a newborn or the controller of a baby humanoid robot trying to make sense of unprocessed sensorimotor time series. Here, we present a framework for studying the dynamic functional connectivity between the multimodal sensory signals of a robotic agent to uncover an underlying structure. Using instantaneous mutual information, we capture the time-varying functional connectivity (FC) between proprioceptive, tactile, and visual signals, revealing the sensorimotor relationships. Using an infinite relational model, we identified sensorimotor modules and their evolving connectivity. To further interpret these dynamic interactions, we employed non-negative matrix factorization, which decomposed the connectivity patterns into additive factors and their corresponding temporal coefficients. These factors can be considered the agent's motion primitives or movement synergies that the agent can use to make sense of its sensorimotor space and later for behavior selection. In the future, the method can be deployed in robot learning as well as in the analysis of human movement trajectories or brain signals.

Dynamic functional connectivity (dFC) using resting-state functional magnetic resonance imaging (rs-fMRI) is an advanced technique for capturing the dynamic changes of neural activities, and can be very useful in the studies of brain diseases such as Alzheimer's disease (AD). Yet, existing studies have not fully leveraged the sequential information embedded within dFC that can potentially provide valuable information when identifying brain conditions. In this paper, we propose a novel framework that jointly learns the embedding of both spatial and temporal information within dFC based on the transformer architecture. Specifically, we first construct dFC networks from rs-fMRI data through a sliding window strategy. Then, we simultaneously employ a temporal block and a spatial block to capture higher-order representations of dynamic spatio-temporal dependencies, via mapping them into an efficient fused feature representation. To further enhance the robustness of these feature representations by reducing the dependency on labeled data, we also introduce a contrastive learning strategy to manipulate different brain states. Experimental results on 345 subjects with 570 scans from the Alzheimer's Disease Neuroimaging Initiative (ADNI) demonstrate the superiority of our proposed method for MCI (Mild Cognitive Impairment, the prodromal stage of AD) prediction, highlighting its potential for early identification of AD.

In the field of dynamic functional connectivity, the sliding-window method is widely used and its stability is generally recognized. However, the sliding-window method's data processing within the window is overly simplistic, which to some extent limits its effectiveness. This study proposes a feature expansion method based on random convolution, which achieves better and more noise-resistant results than the sliding-window method without requiring training. Experiments on simulated data show that the dynamic functional connectivity matrix and time series obtained using the random convolution method have a higher degree of fit (95.59\%) with the standard answers within shorter time windows, compared to the sliding-window method (45.99\%). Gender difference studies on real data also reveal that the random convolution method uncovers more gender differences than the sliding-window method. Through theoretical analysis, we propose a more comprehensive convolutional functional connectivity computation model, with the sliding-window method being a special case of this model, thereby opening up vast potential for research methods in dynamic functional connectivity.

Dynamic functional connectivity (FC) has in recent years become a topic of interest in the neuroimaging community. Several models and methods exist for both functional magnetic resonance imaging (fMRI) and electroencephalography (EEG), and the results point towards the conclusion that FC exhibits dynamic changes. The existing approaches modeling dynamic connectivity have primarily been based on time-windowing the data and k-means clustering. We propose a non-parametric generative model for dynamic FC in fMRI that does not rely on specifying window lengths and number of dynamic states. Rooted in Bayesian statistical modeling we use the predictive likelihood to investigate if the model can discriminate between a motor task and rest both within and across subjects. We further investigate what drives dynamic states using the model on the entire data collated across subjects and task/rest. We find that the number of states extracted are driven by subject variability and preprocessing differences while the individual states are almost purely defined by either task or rest. This questions how we in general interpret dynamic FC and points to the need for more research on what drives dynamic FC.