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Masked Autoencoder Joint Learning for Robust Spitzoid Tumor Classification
Carretero, Ilรกn, Mahtani, Roshni, Perez-Deben, Silvia, Gonzรกlez-Muรฑoz, Josรฉ Francisco, Monteagudo, Carlos, Naranjo, Valery, del Amor, Rocรญo
Accurate diagnosis of spitzoid tumors (ST) is critical to ensure a favorable prognosis and to avoid both under- and over-treatment. Epigenetic data, particularly DNA methylation, provide a valuable source of information for this task. However, prior studies assume complete data, an unrealistic setting as methylation profiles frequently contain missing entries due to limited coverage and experimental artifacts. Our work challenges these favorable scenarios and introduces ReMAC, an extension of ReMasker designed to tackle classification tasks on high-dimensional data under complete and incomplete regimes. Evaluation on real clinical data demonstrates that ReMAC achieves strong and robust performance compared to competing classification methods in the stratification of ST. Code is available: https://github.com/roshni-mahtani/ReMAC.
Are Foundation Models Useful for Bankruptcy Prediction?
Kostrzewa, Marcin, Furman, Oleksii, Furman, Roman, Tomczak, Sebastian, Ziฤba, Maciej
Foundation models have shown promise across various financial applications, yet their effectiveness for corporate bankruptcy prediction remains systematically unevaluated against established methods. We study bankruptcy forecasting using Llama-3.3-70B-Instruct and TabPFN, evaluated on large, highly imbalanced datasets of over one million company records from the Visegrรกd Group. We provide the first systematic comparison of foundation models against classical machine learning baselines for this task. Our results show that models such as XGBoost and CatBoost consistently outperform foundation models across all prediction horizons. LLM-based approaches suffer from unreliable probability estimates, undermining their use in risk-sensitive financial settings. TabPFN, while competitive with simpler baselines, requires substantial computational resources with costs not justified by performance gains. These findings suggest that, despite their generality, current foundation models remain less effective than specialized methods for bankruptcy forecasting.
LimiX: Unleashing Structured-Data Modeling Capability for Generalist Intelligence
Zhang, Xingxuan, Ren, Gang, Yu, Han, Yuan, Hao, Wang, Hui, Li, Jiansheng, Wu, Jiayun, Mo, Lang, Mao, Li, Hao, Mingchao, Dai, Ningbo, Xu, Renzhe, Li, Shuyang, Zhang, Tianyang, He, Yue, Wang, Yuanrui, Zhang, Yunjia, Xu, Zijing, Li, Dongzhe, Gao, Fang, Zou, Hao, Liu, Jiandong, Liu, Jiashuo, Xu, Jiawei, Cheng, Kaijie, Li, Kehan, Zhou, Linjun, Li, Qing, Fan, Shaohua, Lin, Xiaoyu, Han, Xinyan, Li, Xuanyue, Lu, Yan, Xue, Yuan, Jiang, Yuanyuan, Wang, Zimu, Wang, Zhenlei, Cui, Peng
We argue that progress toward general intelligence requires complementary foundation models grounded in language, the physical world, and structured data. This report presents LimiX-16M and LimiX-2M, two instantiations of our large structured-data models (LDMs). Both models treat structured data as a joint distribution over variables and missingness, thus capable of addressing a wide range of tabular tasks through query-based conditional prediction via a single model. They are pretrained using masked joint-distribution modeling with an episodic, context-conditional objective, supporting rapid, training-free adaptation at inference. We evaluate LimiX models across 11 large structured-data benchmarks with broad regimes of sample size, feature dimensionality, class number, categorical-to-numerical feature ratio, missingness, and sample-to-feature ratios. LimiX-16M consistently surpasses strong baselines, as shown in Figure 1 and Figure 2. The superiority holds across a wide range of tasks, such as classification, regression, missing value imputation, and data generation, often by substantial margins, while avoiding task-specific architectures or bespoke training per task. Notably, LimiX-2M delivers strong results under tight compute and memory budgets. We also present the first scaling law study for LDMs, revealing how data and model scaling jointly influence downstream performance and offering quantitative guidance for tabular foundation modeling. All LimiX models are publicly accessible under Apache 2.0.
TabArena: A Living Benchmark for Machine Learning on Tabular Data
Erickson, Nick, Purucker, Lennart, Tschalzev, Andrej, Holzmรผller, David, Desai, Prateek Mutalik, Salinas, David, Hutter, Frank
With the growing popularity of deep learning and foundation models for tabular data, the need for standardized and reliable benchmarks is higher than ever. However, current benchmarks are static. Their design is not updated even if flaws are discovered, model versions are updated, or new models are released. To address this, we introduce TabArena, the first continuously maintained living tabular benchmarking system. To launch TabArena, we manually curate a representative collection of datasets and well-implemented models, conduct a large-scale benchmarking study to initialize a public leaderboard, and assemble a team of experienced maintainers. Our results highlight the influence of validation method and ensembling of hyperparameter configurations to benchmark models at their full potential. While gradient-boosted trees are still strong contenders on practical tabular datasets, we observe that deep learning methods have caught up under larger time budgets with ensembling. At the same time, foundation models excel on smaller datasets. Finally, we show that ensembles across models advance the state-of-the-art in tabular machine learning. We observe that some deep learning models are overrepresented in cross-model ensembles due to validation set overfitting, and we encourage model developers to address this issue. We launch TabArena with a public leaderboard, reproducible code, and maintenance protocols to create a living benchmark available at https://tabarena.ai.
SLA-Centric Automated Algorithm Selection Framework for Cloud Environments
Rizwan, Siana, Ahmed, Tasnim, Choudhury, Salimur
Cloud computing offers on-demand resource access, regulated by Service-Level Agreements (SLAs) between consumers and Cloud Service Providers (CSPs). SLA violations can impact efficiency and CSP profitability. In this work, we propose an SLA-aware automated algorithm-selection framework for combinatorial optimization problems in resource-constrained cloud environments. The framework uses an ensemble of machine learning models to predict performance and rank algorithm-hardware pairs based on SLA constraints. We also apply our framework to the 0-1 knapsack problem. We curate a dataset comprising instance specific features along with memory usage, runtime, and optimality gap for 6 algorithms. As an empirical benchmark, we evaluate the framework on both classification and regression tasks. Our ablation study explores the impact of hyperparameters, learning approaches, and large language models effectiveness in regression, and SHAP-based interpretability.
The Impact of Feature Scaling In Machine Learning: Effects on Regression and Classification Tasks
Pinheiro, Joรฃo Manoel Herrera, de Oliveira, Suzana Vilas Boas, Silva, Thiago Henrique Segreto, Saraiva, Pedro Antonio Rabelo, de Souza, Enzo Ferreira, Godoy, Ricardo V., Ambrosio, Leonardo Andrรฉ, Becker, Marcelo
This research addresses the critical lack of comprehensive studies on feature scaling by systematically evaluating 12 scaling techniques - including several less common transformations - across 14 different Machine Learning algorithms and 16 datasets for classification and regression tasks. We meticulously analyzed impacts on predictive performance (using metrics such as accuracy, MAE, MSE, and $R^2$) and computational costs (training time, inference time, and memory usage). Key findings reveal that while ensemble methods (such as Random Forest and gradient boosting models like XGBoost, CatBoost and LightGBM) demonstrate robust performance largely independent of scaling, other widely used models such as Logistic Regression, SVMs, TabNet, and MLPs show significant performance variations highly dependent on the chosen scaler. This extensive empirical analysis, with all source code, experimental results, and model parameters made publicly available to ensure complete transparency and reproducibility, offers model-specific crucial guidance to practitioners on the need for an optimal selection of feature scaling techniques.
Comparing the Effects of Persistence Barcodes Aggregation and Feature Concatenation on Medical Imaging
Ali, Dashti A., Do, Richard K. G., Jarnagin, William R., Asaad, Aras T., Simpson, Amber L.
In medical image analysis, feature engineering plays an important role in the design and performance of machine learning models. Persistent homology (PH), from the field of topological data analysis (TDA), demonstrates robustness and stability to data perturbations and addresses the limitation from traditional feature extraction approaches where a small change in input results in a large change in feature representation. Using PH, we store persistent topological and geometrical features in the form of the persistence barcode whereby large bars represent global topological features and small bars encapsulate geometrical information of the data. When multiple barcodes are computed from 2D or 3D medical images, two approaches can be used to construct the final topological feature vector in each dimension: aggregating persistence barcodes followed by featurization or concatenating topological feature vectors derived from each barcode. In this study, we conduct a comprehensive analysis across diverse medical imaging datasets to compare the effects of the two aforementioned approaches on the performance of classification models. The results of this analysis indicate that feature concatenation preserves detailed topological information from individual barcodes, yields better classification performance and is therefore a preferred approach when conducting similar experiments.
Data-efficient Meta-models for Evaluation of Context-based Questions and Answers in LLMs
Belikova, Julia, Polev, Konstantin, Parchiev, Rauf, Simakov, Dmitry
Large Language Models (LLMs) and Retrieval-Augmented Generation (RAG) systems are increasingly deployed in industry applications, yet their reliability remains hampered by challenges in detecting hallucinations. While supervised state-of-the-art (SOTA) methods that leverage LLM hidden states -- such as activation tracing and representation analysis -- show promise, their dependence on extensively annotated datasets limits scalability in real-world applications. This paper addresses the critical bottleneck of data annotation by investigating the feasibility of reducing training data requirements for two SOTA hallucination detection frameworks: Lookback Lens, which analyzes attention head dynamics, and probing-based approaches, which decode internal model representations. We propose a methodology combining efficient classification algorithms with dimensionality reduction techniques to minimize sample size demands while maintaining competitive performance. Evaluations on standardized question-answering RAG benchmarks show that our approach achieves performance comparable to strong proprietary LLM-based baselines with only 250 training samples. These results highlight the potential of lightweight, data-efficient paradigms for industrial deployment, particularly in annotation-constrained scenarios.