Automated seizure detection is of great importance to epilepsy diagnosis and treatment. An emerging method used in seizure detection, stereoelectroencephalography (SEEG), can provide detailed and stereoscopic brainwave information. However, modeling SEEG in clinical scenarios will face challenges like huge domain shift between different patients and dramatic pattern evolution among different brain areas. In this study, we propose a Pretraining-based model for Patient-independent seizure detection (PPi) to address these challenges. Firstly, we design two novel self-supervised tasks which can extract rich information from abundant SEEG data while preserving the unique characteristics between brain signals recorded from different brain areas. Then two techniques, channel background subtraction and brain region enhancement, are proposed to effectively tackle the domain shift problem. Extensive experiments show that PPi outperforms the SOTA baselines on two public datasets and a real-world clinical dataset collected by us, which demonstrates the effectiveness and practicability of PPi. Finally, visualization analysis illustrates the rationality of the two domain generalization techniques.

Animal behavior is driven by multiple brain regions working in parallel with distinct control policies. We present a biologically plausible model of off-policy reinforcement learning in the basal ganglia, which enables learning in such an architecture. The model accounts for action-related modulation of dopamine activity that is not captured by previous models that implement on-policy algorithms. In particular, the model predicts that dopamine activity signals a combination of reward prediction error (as in classic models) and "action surprise," a measure of how unexpected an action is relative to the basal ganglia's current policy. In the presence of the action surprise term, the model implements an approximate form of Q-learning.

This paper presents Generalized Correspondence-LDA (GC-LDA), a generalization of the Correspondence-LDA model that allows for variable spatial representations to be associated with topics, and increased flexibility in terms of the strength of the correspondence between data types induced by the model. We present three variants of GC-LDA, each of which associates topics with a different spatial representation, and apply them to a corpus of neuroimaging data. In the context of this dataset, each topic corresponds to a functional brain region, where the region's spatial extent is captured by a probability distribution over neural activity, and the region's cognitive function is captured by a probability distribution over linguistic terms. We illustrate the qualitative improvements offered by GC-LDA in terms of the types of topics extracted with alternative spatial representations, as well as the model's ability to incorporate a-priori knowledge from the neuroimaging literature. We furthermore demonstrate that the novel features of GC-LDA improve predictions for missing data.

Neural Information Processing Systems http://nips.cc/

Neuroscience research has made immense progress over the last decade, but our understanding of the brain remains fragmented and piecemeal: the dream of probing an arbitrary brain region and automatically reading out the information encoded in its neural activity remains out of reach. In this work, we build towards a first foundation model for neural spiking data that can solve a diverse set of tasks across multiple brain areas. We introduce a novel self-supervised modeling approach for population activity in which the model alternates between masking out and reconstructing neural activity across different time steps, neurons, and brain regions. To evaluate our approach, we design unsupervised and supervised prediction tasks using the International Brain Laboratory repeated site dataset, which is comprised of Neuropixels recordings targeting the same brain locations across 48 animals and experimental sessions. The prediction tasks include single-neuron and region-level activity prediction, forward prediction, and behavior decoding. We demonstrate that our multi-task-masking (MtM) approach significantly improves the performance of current state-of-the-art population models and enables multi-task learning. We also show that by training on multiple animals, we can improve the generalization ability of the model to unseen animals, paving the way for a foundation model of the brain at single-cell, single-spike resolution.

Neuroscience studies of human decision-making abilities commonly involve subjects completing a decision-making task while BOLD signals are recorded using fMRI. Hypotheses are tested about which brain regions mediate the effect of past experience, such as rewards, on future actions. One standard approach to this is model-based fMRI data analysis, in which a model is fitted to the behavioral data, i.e., a subject's choices, and then the neural data are parsed to find brain regions whose BOLD signals are related to the model's internal signals. However, the internal mechanics of such purely behavioral models are not constrained by the neural data, and therefore might miss or mischaracterize aspects of the brain. To address this limitation, we introduce a new method using recurrent neural network models that are flexible enough to be jointly fitted to the behavioral and neural data. We trained a model so that its internal states were suitably related to neural activity during the task, while at the same time its output predicted the next action a subject would execute. We then used the fitted model to create a novel visualization of the relationship between the activity in brain regions at different times following a reward and the choices the subject subsequently made. Finally, we validated our method using a previously published dataset. We found that the model was able to recover the underlying neural substrates that were discovered by explicit model engineering in the previous work, and also derived new results regarding the temporal pattern of brain activity.

In the method section of our paper, we describe the general encoding-decoding paradigm. We provide a brief overview of our data preprocessing pipeline, which involves the following steps. We employ the method of Boussard et al. (2021) to estimate the location of Decentralized registration (Windolf et al., 2022) is applied to track and correct Figure 6: Motion drift in "good" and "bad" sorting recordings. "bad" sorting example, which is still affected by drift even after registration. To decode binary behaviors, such as the mouse's left or right choices, we utilize In this section, we provide visualizations to gain insights into the effectiveness of our proposed decoder.