Generalizing to unseen graph tasks without task-specific supervision is challenging: conventional graph neural networks are typically tied to a fixed label space, while large language models (LLMs) struggle to capture graph structure. We introduce UniGTE, an instruction-tuned encoder-decoder framework that unifies structural and semantic reasoning. The encoder augments a pretrained autoregressive LLM with learnable alignment tokens and a structure-aware graph-text attention mechanism, enabling it to attend jointly to a tokenized graph and a natural-language task prompt while remaining permutation-invariant to node order.

Generalizing to unseen graph tasks without task-specific supervision is challenging: conventional graph neural networks are typically tied to a fixed label space, while large language models (LLMs) struggle to capture graph structure. We introduce UniGTE, an instruction-tuned encoder-decoder framework that unifies structural and semantic reasoning. The encoder augments a pretrained autoregressive LLM with learnable alignment tokens and a structure-aware graph-text attention mechanism, enabling it to attend jointly to a tokenized graph and a natural-language task prompt while remaining permutation-invariant to node order. This yields compact, task-aware graph representations. Conditioned solely on these representations, a frozen LLM decoder predicts and reconstructs: it outputs the task answer and simultaneously paraphrases the input graph in natural language. The reconstruction objective regularizes the encoder to preserve structural cues. UniGTE is instruction-tuned on five datasets spanning node-level, edge-level, and graph-level tasks across diverse domains, yet requires no fine-tuning at inference. It achieves new state-of-the-art zero-shot results on node classification, link prediction, graph classification, and graph regression under cross-task and cross-domain settings, demonstrating that tight integration of graph structure with LLM semantics enables robust, transferable graph reasoning.

Decoding language information from brain signals represents a vital research area within brain-computer interfaces, particularly in the context of deciphering the semantic information from the fMRI signal. Although existing work uses LLM to achieve this goal, their method does not use an end-to-end approach and avoids the LLM in the mapping of fMRI-to-text, leaving space for the exploration of the LLM in auditory decoding. In this paper, we introduce a novel method, the Brain Prompt GPT (BP-GPT). By using the brain representation that is extracted from the fMRI as a prompt, our method can utilize GPT-2 to decode fMRI signals into stimulus text. Further, we introduce the text prompt and align the fMRI prompt to it. By introducing the text prompt, our BP-GPT can extract a more robust brain prompt and promote the decoding of pre-trained LLM. We evaluate our BP-GPT on the open-source auditory semantic decoding dataset and achieve a significant improvement up to 4.61 on METEOR and 2.43 on BERTScore across all the subjects compared to the state-of-the-art method. The experimental results demonstrate that using brain representation as a prompt to further drive LLM for auditory neural decoding is feasible and effective. The code is available at https://github.com/1994cxy/BP-GPT.