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NeuralFDR: Learning Discovery Thresholds from Hypothesis Features

Fei Xia, Martin J. Zhang, James Y. Zou, David Tse

Neural Information Processing Systems

As datasets grow richer, an important challenge is to leverage the full features in the data to maximize the number of useful discoveries while controlling for false positives. We address this problem in the context of multiple hypotheses testing, where for each hypothesis, we observe a p-value along with a set of features specific to that hypothesis. For example, in genetic association studies, each hypothesis tests the correlation between a variant and the trait.





Nonlinear Acceleration of Stochastic Algorithms

Neural Information Processing Systems

Extrapolation methods use the last few iterates of an optimization algorithm to produce a better estimate of the optimum. They were shown to achieve optimal convergence rates in a deterministic setting using simple gradient iterates. Here, we study extrapolation methods in a stochastic setting, where the iterates are produced by either a simple or an accelerated stochastic gradient algorithm.




EEG-GRAPH: A Factor-Graph-Based Model for Capturing Spatial, Temporal, and Observational Relationships in Electroencephalograms

Yogatheesan Varatharajah, Min Jin Chong, Krishnakant Saboo, Brent Berry, Benjamin Brinkmann, Gregory Worrell, Ravishankar Iyer

Neural Information Processing Systems

This paper presents a probabilistic-graphical model that can be used to infer characteristics of instantaneous brain activity by jointly analyzing spatial and temporal dependencies observed in electroencephalograms (EEG). Specifically, we describe a factor-graph-based model with customized factor-functions defined based on domain knowledge, to infer pathologic brain activity with the goal of identifying seizure-generating brain regions in epilepsy patients. We utilize an inference technique based on the graph-cut algorithm to exactly solve graph inference in polynomial time. We validate the model by using clinically collected intracranial EEG data from 29 epilepsy patients to show that the model correctly identifies seizure-generating brain regions. Our results indicate that our model outperforms two conventional approaches used for seizure-onset localization (5-7% better AUC: 0.72, 0.67, 0.65) and that the proposed inference technique provides 3-10% gain in AUC ( 0.72, 0.62, 0.69) compared to sampling-based alternatives.



A day with Newfoundlands, the original ship's dog

Popular Science

Newfoundland dogs are still practicing the same lifesaving skills they would have used in the 19th century. Breakthroughs, discoveries, and DIY tips sent every weekday. It's a dark and stormy night and you've suddenly found yourself swept off of your wooden vessel into the wild Atlantic Ocean. It's 1893, so your woolen clothes are pulling you down to Davy Jones' locker. What kind of dog would want to rescue you?