taxnodes:Technology: Overviews
Testing Semantic Importance via Betting
Recent works have extended notions of feature importance to semantic concepts that are inherently interpretable to the users interacting with a black-box predictive model. Yet, precise statistical guarantees such as false positive rate and false discovery rate control are needed to communicate findings transparently, and to avoid unintended consequences in real-world scenarios. In this paper, we formalize the global (i.e., over a population) and local (i.e., for a sample) statistical importance of semantic concepts for the predictions of opaque models by means of conditional independence, which allows for rigorous testing. We use recent ideas of sequential kernelized independence testing to induce a rank of importance across concepts, and we showcase the effectiveness and flexibility of our framework on synthetic datasets as well as on image classification using several vision-language models.
NanoBaseLib: A Multi-Task Benchmark Dataset for Nanopore Sequencing Lu Cheng Department of Computer Science, Aalto University, Finland
Nanopore sequencing is the third-generation sequencing technology with capabilities of generating long-read sequences and directly measuring modifications on DNA/RNA molecules, which makes it ideal for biological applications such as human Telomere-to-Telomere (T2T) genome assembly, Ebola virus surveillance and COVID-19 mRNA vaccine development. However, accuracies of computational methods in various tasks of Nanopore sequencing data analysis are far from satisfactory. For instance, the base calling accuracy of Nanopore RNA sequencing is 90%, while the aim is 99.9%. This highlights an urgent need of contributions from the machine learning community. A bottleneck that prevents machine learning researchers from entering this field is the lack of a large integrated benchmark dataset.
Paraphrasing evades detectors of AI-generated text, but retrieval is an effective defense Kalpesh Krishna Yixiao Song John Wieting
The rise in malicious usage of large language models, such as fake content creation and academic plagiarism, has motivated the development of approaches that identify AI-generated text, including those based on watermarking or outlier detection. However, the robustness of these detection algorithms to paraphrases of AI-generated text remains unclear.
Conditional Synthesis of 3D Molecules with Time Correction Sampler 1
Diffusion models have demonstrated remarkable success in various domains, including molecular generation. However, conditional molecular generation remains a fundamental challenge due to an intrinsic trade-off between targeting specific chemical properties and generating meaningful samples from the data distribution.
Appendix 1 2 Related Work 3 3 The D
Additionally, we provide a checklist, which encourages participants to specify design decisions, which allows for more granular comparison between submissions. A.1 Filtering track rules Participants can enter submissions for one or many different scales: small, medium, large or xlarge, which represent the raw number of image-text pairs in CommonPool that should be filtered.
DiReCT: Diagnostic Reasoning for Clinical Notes via Large Language Models
Large language models (LLMs) have recently showcased remarkable capabilities, spanning a wide range of tasks and applications, including those in the medical domain. Models like GPT-4 excel in medical question answering but may face challenges in the lack of interpretability when handling complex tasks in real clinical settings. We thus introduce the diagnostic reasoning dataset for clinical notes (DiReCT), aiming at evaluating the reasoning ability and interpretability of LLMs compared to human doctors. It contains 511 clinical notes, each meticulously annotated by physicians, detailing the diagnostic reasoning process from observations in a clinical note to the final diagnosis. Additionally, a diagnostic knowledge graph is provided to offer essential knowledge for reasoning, which may not be covered in the training data of existing LLMs.
Depth-First Proof-Number Search with Heuristic Edge Cost and Application to Chemical Synthesis Planning
Akihiro Kishimoto, Beat Buesser, Bei Chen, Adi Botea
Search techniques, such as Monte Carlo Tree Search (MCTS) and Proof-Number Search (PNS), are effective in playing and solving games. However, the understanding of their performance in industrial applications is still limited. We investigate MCTS and Depth-First Proof-Number (DFPN) Search, a PNS variant, in the domain of Retrosynthetic Analysis (RA). We find that DFPN's strengths, that justify its success in games, have limited value in RA, and that an enhanced MCTS variant by Segler et al. significantly outperforms DFPN. We address this disadvantage of DFPN in RA with a novel approach to combine DFPN with Heuristic Edge Initialization. Our new search algorithm DFPN-E outperforms the enhanced MCTS in search time by a factor of 3 on average, with comparable success rates.
Adversarial Text Generation via Feature-Mover's Distance
Liqun Chen, Shuyang Dai, Chenyang Tao, Haichao Zhang, Zhe Gan, Dinghan Shen, Yizhe Zhang, Guoyin Wang, Ruiyi Zhang, Lawrence Carin
Generative adversarial networks (GANs) have achieved significant success in generating real-valued data. However, the discrete nature of text hinders the application of GAN to text-generation tasks. Instead of using the standard GAN objective, we propose to improve text-generation GAN via a novel approach inspired by optimal transport. Specifically, we consider matching the latent feature distributions of real and synthetic sentences using a novel metric, termed the featuremover's distance (FMD). This formulation leads to a highly discriminative critic and easy-to-optimize objective, overcoming the mode-collapsing and brittle-training problems in existing methods. Extensive experiments are conducted on a variety of tasks to evaluate the proposed model empirically, including unconditional text generation, style transfer from non-parallel text, and unsupervised cipher cracking. The proposed model yields superior performance, demonstrating wide applicability and effectiveness.