Spatiotemporal time series nowcasting should preserve temporal and spatial dynamics in the sense that generated new sequences from models respect the covariance relationship from history. Conventional feature extractors are built with deep convolutional neural networks (CNN). However, CNN models have limits to image-like applications where data can be formed with high-dimensional arrays. In contrast, applications in social networks, road traffic, physics, and chemical property prediction where data features can be organized with nodes and edges of graphs. Transformer architecture is an emerging method for predictive models, bringing high accuracy and efficiency due to attention mechanism design. This paper proposes a spatiotemporal model, namely GTrans, that transforms data features into graph embeddings and predicts temporal dynamics with a transformer model. According to our experiments, we demonstrate that GTrans can model spatial and temporal dynamics and nowcasts extreme events for datasets. Furthermore, in all the experiments, GTrans can achieve the highest F1 and F2 scores in binary-class prediction tests than the baseline models.

Data-intensive applications impact many domains, and their steadily increasing size and complexity demands high-performance, highly usable environments. We integrate a set of ideas developed in various data science and data engineering frameworks. They employ a set of operators on specific data abstractions that include vectors, matrices, tensors, graphs, and tables. Our key concepts are inspired from systems like MPI, HPF (High-Performance Fortran), NumPy, Pandas, Spark, Modin, PyTorch, TensorFlow, RAPIDS(NVIDIA), and OneAPI (Intel). Further, it is crucial to support different languages in everyday use in the Big Data arena, including Python, R, C++, and Java. We note the importance of Apache Arrow and Parquet for enabling language agnostic high performance and interoperability. In this paper, we propose High-Performance Tensors, Matrices and Tables (HPTMT), an operator-based architecture for data-intensive applications, and identify the fundamental principles needed for performance and usability success. We illustrate these principles by a discussion of examples using our software environments, Cylon and Twister2 that embody HPTMT.

Multidimensional scaling of gene sequence data has long played a vital role in analysing gene sequence data to identify clusters and patterns. However the computation complexities and memory requirements of state-of-the-art dimensional scaling algorithms make it infeasible to scale to large datasets. In this paper we present an autoencoder-based dimensional reduction model which can easily scale to datasets containing millions of gene sequences, while attaining results comparable to state-of-the-art MDS algorithms with minimal resource requirements. The model also supports out-of-sample data points with a 99.5%+ accuracy based on our experiments. The proposed model is evaluated against DAMDS with a real world fungi gene sequence dataset. The presented results showcase the effectiveness of the autoencoder-based dimension reduction model and its advantages.

We present a taxonomy of research on Machine Learning (ML) applied to enhance simulations together with a catalog of some activities. We cover eight patterns for the link of ML to the simulations or systems plus three algorithmic areas: particle dynamics, agent-based models and partial differential equations. The patterns are further divided into three action areas: Improving simulation with Configurations and Integration of Data, Learn Structure, Theory and Model for Simulation, and Learn to make Surrogates.

We recently outlined the vision of "Learning Everywhere" which captures the possibility and impact of how learning methods and traditional HPC methods can be coupled together. A primary driver of such coupling is the promise that Machine Learning (ML) will give major performance improvements for traditional HPC simulations. Motivated by this potential, the ML around HPC class of integration is of particular significance. In a related follow-up paper, we provided an initial taxonomy for integrating learning around HPC methods. In this paper, which is part of the Learning Everywhere series, we discuss "how" learning methods and HPC simulations are being integrated to enhance effective performance of computations. This paper identifies several modes --- substitution, assimilation, and control, in which learning methods integrate with HPC simulations and provide representative applications in each mode. This paper discusses some open research questions and we hope will motivate and clear the ground for MLaroundHPC benchmarks.

A system for color correction has been designed, built, and tested successfully; theessential components are three custom chips built using subthreshold analogCMOS VLSI. The system, based on Land's Retinex theory of color constancy, produces colors similar in many respects to those produced by the visual system. Resistive grids implemented in analog VLSI perform the smoothing operation central to the algorithm at video rates. With the electronic system, the strengths and weaknesses of the algorithm are explored.

A system for color correction has been designed, built, and tested successfully; the essential components are three custom chips built using subthreshold analog CMOS VLSI. The system, based on Land's Retinex theory of color constancy, produces colors similar in many respects to those produced by the visual system. Resistive grids implemented in analog VLSI perform the smoothing operation central to the algorithm at video rates. With the electronic system, the strengths and weaknesses of the algorithm are explored.