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 Feng, Yang


A ROAD to Classification in High Dimensional Space

arXiv.org Machine Learning

For high-dimensional classification, it is well known that naively performing the Fisher discriminant rule leads to poor results due to diverging spectra and noise accumulation. Therefore, researchers proposed independence rules to circumvent the diverse spectra, and sparse independence rules to mitigate the issue of noise accumulation. However, in biological applications, there are often a group of correlated genes responsible for clinical outcomes, and the use of the covariance information can significantly reduce misclassification rates. The extent of such error rate reductions is unveiled by comparing the misclassification rates of the Fisher discriminant rule and the independence rule. To materialize the gain based on finite samples, a Regularized Optimal Affine Discriminant (ROAD) is proposed based on a covariance penalty. ROAD selects an increasing number of features as the penalization relaxes. Further benefits can be achieved when a screening method is employed to narrow the feature pool before hitting the ROAD. An efficient Constrained Coordinate Descent algorithm (CCD) is also developed to solve the associated optimization problems. Sampling properties of oracle type are established. Simulation studies and real data analysis support our theoretical results and demonstrate the advantages of the new classification procedure under a variety of correlation structures. A delicate result on continuous piecewise linear solution path for the ROAD optimization problem at the population level justifies the linear interpolation of the CCD algorithm.


Nonparametric Independence Screening in Sparse Ultra-High Dimensional Additive Models

arXiv.org Machine Learning

A variable screening procedure via correlation learning was proposed Fan and Lv (2008) to reduce dimensionality in sparse ultra-high dimensional models. Even when the true model is linear, the marginal regression can be highly nonlinear. To address this issue, we further extend the correlation learning to marginal nonparametric learning. Our nonparametric independence screening is called NIS, a specific member of the sure independence screening. Several closely related variable screening procedures are proposed. Under the nonparametric additive models, it is shown that under some mild technical conditions, the proposed independence screening methods enjoy a sure screening property. The extent to which the dimensionality can be reduced by independence screening is also explicitly quantified. As a methodological extension, an iterative nonparametric independence screening (INIS) is also proposed to enhance the finite sample performance for fitting sparse additive models. The simulation results and a real data analysis demonstrate that the proposed procedure works well with moderate sample size and large dimension and performs better than competing methods.


High-dimensional variable selection for Cox's proportional hazards model

arXiv.org Machine Learning

Variable selection in high dimensional space has challenged many contemporary statistical problems from many frontiers of scientific disciplines. Recent technology advance has made it possible to collect a huge amount of covariate information such as microarray, proteomic and SNP data via bioimaging technology while observing survival information on patients in clinical studies. Thus, the same challenge applies to the survival analysis in order to understand the association between genomics information and clinical information about the survival time. In this work, we extend the sure screening procedure Fan and Lv (2008) to Cox's proportional hazards model with an iterative version available. Numerical simulation studies have shown encouraging performance of the proposed method in comparison with other techniques such as LASSO. This demonstrates the utility and versatility of the iterative sure independent screening scheme.