While tabular classification has traditionally relied on from-scratch training, a recent breakthrough called prior-data fitted networks (PFNs) challenges this approach. Similar to large language models, PFNs make use of pretraining and in-context learning to achieve strong performance on new tasks in a single forward pass. However, current PFNs have limitations that prohibit their widespread adoption. Notably, TabPFN achieves very strong performance on small tabular datasets but is not designed to make predictions for datasets of size larger than 1000. In this work, we overcome these limitations and substantially improve the performance of PFNs via context optimization. We introduce TuneTables, a parameter-efficient fine-tuning strategy for PFNs that compresses large datasets into a smaller learned context. We conduct extensive experiments on nineteen algorithms over 98 datasets and find that TuneTables achieves the best performance on average, outperforming boosted trees such as CatBoost, while optimizing fewer than 5% of TabPFN's parameters. Furthermore, we show that TuneTables can be used as an interpretability tool and can even be used to mitigate biases by optimizing a fairness objective.

Data is a critical resource for machine learning (ML), yet working with data remains a key friction point. This paper introduces Croissant, a metadata format for datasets that creates a shared representation across ML tools, frameworks, and platforms. Croissant makes datasets more discoverable, portable, and interoperable, thereby addressing significant challenges in ML data management. Croissant is already supported by several popular dataset repositories, spanning hundreds of thousands of datasets, enabling easy loading into the most commonly-used ML frameworks, regardless of where the data is stored. Our initial evaluation by human raters shows that Croissant metadata is readable, understandable, complete, yet concise.

This paper studies a curious phenomenon in learning energy-based model (EBM) using MCMC. In each learning iteration, we generate synthesized examples by running a non-convergent, non-mixing, and non-persistent short-run MCMC toward the current model, always starting from the same initial distribution such as uniform noise distribution, and always running a fixed number of MCMC steps. After generating synthesized examples, we then update the model parameters according to the maximum likelihood learning gradient, as if the synthesized examples are fair samples from the current model. We treat this non-convergent short-run MCMC as a learned generator model or a flow model. We provide arguments for treating the learned non-convergent short-run MCMC as a valid model. We show that the learned short-run MCMC is capable of generating realistic images. More interestingly, unlike traditional EBM or MCMC, the learned short-run MCMC is capable of reconstructing observed images and interpolating between images, like generator or flow models. The code can be found in the Appendix.

Large language models (LLMs) often generate content that contains factual errors when responding to fact-seeking prompts on open-ended topics. To benchmark a model's long-form factuality in open domains, we first use GPT-4 to generate LongFact, a prompt set comprising thousands of questions spanning 38 topics. We then propose that LLM agents can be used as automated evaluators for longform factuality through a method which we call Search-Augmented Factuality Evaluator (SAFE). SAFE utilizes an LLM to break down a long-form response into a set of individual facts and to evaluate the accuracy of each fact using a multi-step reasoning process comprising sending search queries to Google Search and determining whether a fact is supported by the search results. Furthermore, we propose extending F1 score as an aggregated metric for long-form factuality.

There is an emerging trend to train a network with stochastic architectures to enable various architectures to be plugged and played during inference. However, the existing investigation is highly entangled with neural architecture search (NAS), limiting its widespread use across scenarios. In this work, we decouple the training of a network with stochastic architectures (NSA) from NAS and provide a first systematical investigation on it as a stand-alone problem. We first uncover the characteristics of NSA in various aspects ranging from training stability, convergence, predictive behaviour, to generalization capacity to unseen architectures. We identify various issues of the vanilla NSA, such as training/test disparity and function mode collapse, and further propose the solutions to these issues with theoretical and empirical insights. We believe that these results could also serve as good heuristics for NAS. Given these understandings, we further apply the NSA with our improvements into diverse scenarios to fully exploit its promise of inference-time architecture stochasticity, including model ensemble, uncertainty estimation and semi-supervised learning. Remarkable performance (e.g., 2.75% error rate and 0.0032 expected calibration error on CIFAR-10) validate the effectiveness of such a model, providing new perspectives of exploring the potential of the network with stochastic architectures, beyond NAS.

Instrumental variable (IV) regression is a strategy for learning causal relationships in observational data. If measurements of input X and output Y are confounded, the causal relationship can nonetheless be identified if an instrumental variable Z is available that influences X directly, but is conditionally independent of Y given X and the unmeasured confounder.

For classification models based on neural networks, the maximum predicted class probability is often used as a confidence score. This score rarely predicts well the probability of making a correct prediction and requires a post-processing calibration step. However, many confidence calibration methods fail for problems with many classes. To address this issue, we transform the problem of calibrating a multiclass classifier into calibrating a single surrogate binary classifier. This approach allows for more efficient use of standard calibration methods. We evaluate our approach on numerous neural networks used for image or text classification and show that it significantly enhances existing calibration methods.

The learner's goal is to P AC-learn an

Recent works have extended notions of feature importance to semantic concepts that are inherently interpretable to the users interacting with a black-box predictive model. Yet, precise statistical guarantees such as false positive rate and false discovery rate control are needed to communicate findings transparently, and to avoid unintended consequences in real-world scenarios. In this paper, we formalize the global (i.e., over a population) and local (i.e., for a sample) statistical importance of semantic concepts for the predictions of opaque models by means of conditional independence, which allows for rigorous testing. We use recent ideas of sequential kernelized independence testing to induce a rank of importance across concepts, and we showcase the effectiveness and flexibility of our framework on synthetic datasets as well as on image classification using several vision-language models.

Nanopore sequencing is the third-generation sequencing technology with capabilities of generating long-read sequences and directly measuring modifications on DNA/RNA molecules, which makes it ideal for biological applications such as human Telomere-to-Telomere (T2T) genome assembly, Ebola virus surveillance and COVID-19 mRNA vaccine development. However, accuracies of computational methods in various tasks of Nanopore sequencing data analysis are far from satisfactory. For instance, the base calling accuracy of Nanopore RNA sequencing is 90%, while the aim is 99.9%. This highlights an urgent need of contributions from the machine learning community. A bottleneck that prevents machine learning researchers from entering this field is the lack of a large integrated benchmark dataset.