Reviews: Learning Concave Conditional Likelihood Models for Improved Analysis of Tandem Mass Spectra

The manuscript "Learning Concave Conditional Likelihood Models for Improved Analysis of Tandem Mass Spectra" extends a dynamic Bayesian network approach called DIDEA by introducing a new class of emission distributions. The conditional log-likelihood of those functions remains concave leading to an efficient global optimization method for parameter estimation. This is in stark contrast to the previous variant, for which the best parameter had to be found by grid search. In comparison to other state-of-the-art methods, the new approach outperforms the other methods, while being faster at the same time. Quality Overall the quality of the manuscript is good.