Forward-Backward Activation Algorithm for Hierarchical Hidden Markov Models

Hierarchical Hidden Markov Models (HHMMs) are sophisticated stochastic models that enable us to capture a hierarchical context characterization of sequence data. However, existing HHMM parameter estimation methods require large computations of time complexity O(TN {2D}) at least for model inference, where D is the depth of the hierarchy, N is the number of states in each level, and T is the sequence length. In this paper, we propose a new inference method of HHMMs for which the time complexity is O(TN {D 1}). A key idea of our algorithm is application of the forward-backward algorithm to ''state activation probabilities''. The notion of a state activation, which offers a simple formalization of the hierarchical transition behavior of HHMMs, enables us to conduct model inference efficiently.