This paper describes a system for the unsupervised learning of morphological suffixes and stems from word lists. The system is composed of a generative probability model and hill-climbing and directed search algorithms. By extracting and examining morphologically rich subsets of an input lexicon, the directed search identifies highly productive paradigms.

We present a novel, flexible statistical approach for modelling music and text jointly. The approach is based on multi-modal mixture models and maximum a posteriori estimation using EM. The learned models can be used to browse databases with documents containing music and text, to search for music using queries consisting of music and text (lyrics and other contextual information), to annotate text documents with music, and to automatically recommend or identify similar songs.

We describe the application of probabilistic model-based learning to the problem of automatically identifying classes of galaxies, based on both morphological and pixel intensity characteristics. The EM algorithm can be used to learn how to spatially orient a set of galaxies so that they are geometrically aligned. We augment this "ordering-model" with a mixture model on objects, and demonstrate how classes of galaxies can be learned in an unsupervised manner using a two-level EM algorithm. The resulting models provide highly accurate classi£cation of galaxies in cross-validation experiments.

We propose a dynamic Bayesian model for motifs in biopolymer sequences which captures rich biological prior knowledge and positional dependencies in motif structure in a principled way. Our model posits that the position-specific multinomial parameters for monomer distribution are distributed as a latent Dirichlet-mixture random variable, and the position-specific Dirichlet component is determined by a hidden Markov process. Model parameters can be fit on training motifs using a variational EM algorithm within an empirical Bayesian framework. Variational inference is also used for detecting hidden motifs. Our model improves over previous models that ignore biological priors and positional dependence. It has much higher sensitivity to motifs during detection and a notable ability to distinguish genuine motifs from false recurring patterns.

Most text categorization systems use simple models of documents and document collections. In this paper we describe a technique that improves a simple web page classifier's performance on pages from a new, unseen web site, by exploiting link structure within a site as well as page structure within hub pages. On real-world test cases, this technique significantly and substantially improves the accuracy of a bag-of-words classifier, reducing error rate by about half, on average. The system uses a variant of co-training to exploit unlabeled data from a new site. Pages are labeled using the base classifier; the results are used by a restricted wrapper-learner to propose potential "main-category anchor wrappers"; and finally, these wrappers are used as features by a third learner to find a categorization of the site that implies a simple hub structure, but which also largely agrees with the original bag-of-words classifier.

The problem of learning a semantic representation of a text document from data is addressed, in the situation where a corpus of unlabeled paired documents is available, each pair being formed by a short English document and its French translation. This representation can then be used for any retrieval, categorization or clustering task, both in a standard and in a cross-lingual setting. By using kernel functions, in this case simple bag-of-words inner products, each part of the corpus is mapped to a high-dimensional space. The correlations between the two spaces are then learnt by using kernel Canonical Correlation Analysis. A set of directions is found in the first and in the second space that are maximally correlated. Since we assume the two representations are completely independent apart from the semantic content, any correlation between them should reflect some semantic similarity. Certain patterns of English words that relate to a specific meaning should correlate with certain patterns of French words corresponding to the same meaning, across the corpus. Using the semantic representation obtained in this way we first demonstrate that the correlations detected between the two versions of the corpus are significantly higher than random, and hence that a representation based on such features does capture statistical patterns that should reflect semantic information. Then we use such representation both in cross-language and in single-language retrieval tasks, observing performance that is consistently and significantly superior to LSI on the same data.

We are constructing caching policies that have 13-20% lower miss rates than the best of twelve baseline policies over a large variety of request streams. This represents an improvement of 49-63% over Least Recently Used, the most commonly implemented policy. We achieve this not by designing a specific new policy but by using online Machine Learning algorithms to dynamically shift between the standard policies based on their observed miss rates. A thorough experimental evaluation of our techniques is given, as well as a discussion of what makes caching an interesting online learning problem.

We develop a maximum entropy (maxent) approach to generating recommendations in the context of a user's current navigation stream, suitable for environments where data is sparse, high-dimensional, and dynamic-- conditions typical of many recommendation applications. We address sparsity and dimensionality reduction by first clustering items based on user access patterns so as to attempt to minimize the apriori probability that recommendations will cross cluster boundaries and then recommending only within clusters. We address the inherent dynamic nature of the problem by explicitly modeling the data as a time series; we show how this representational expressivity fits naturally into a maxent framework. We conduct experiments on data from ResearchIndex, a popular online repository of over 470,000 computer science documents. We show that our maxent formulation outperforms several competing algorithms in offline tests simulating the recommendation of documents to ResearchIndex users.

We consider two ubiquitous processes: an industrial dryer and a level tank. For these applications, we compared three particle filtering variants: standard particle filtering, Rao-Blackwellised particle filtering and a version of Rao-Blackwellised particle filtering that does one-step look-ahead to select good sampling regions. We show that the overhead of the extra processing per particle of the more sophisticated methods is more than compensated by the decrease in error and variance.

We present an algorithm to extract features from high-dimensional gene expression profiles, based on the knowledge of a graph which links together genes known to participate to successive reactions in metabolic pathways. Motivated by the intuition that biologically relevant features are likely to exhibit smoothness with respect to the graph topology, the algorithm involves encoding the graph and the set of expression profiles into kernel functions, and performing a generalized form of canonical correlation analysis in the corresponding reproducible kernel Hilbert spaces. Function prediction experiments for the genes of the yeast S. Cerevisiae validate this approach by showing a consistent increase in performance when a state-of-the-art classifier uses the vector of features instead of the original expression profile to predict the functional class of a gene.