We propose an information-theoretic clustering approach that incorporates a pre-known partition of the data, aiming to identify common clusters that cut across the given partition. In the standard clustering setting the formation of clusters is guided by a single source of feature information. The newly utilized pre-partition factor introduces an additional bias that counterbalances the impact of the features whenever they become correlated with this known partition. The resulting algorithmic framework was applied successfully to synthetic data, as well as to identifying text-based cross-religion correspondences.

We describe a procedure which finds a hierarchical clustering by hillclimbing. The cost function we use is a hierarchical extension of the k-means cost; our local moves are tree restructurings and node reorderings. We show these can be accomplished efficiently, by exploiting special properties of squared Euclidean distances and by using techniques from scheduling algorithms.

A novel approach to combining clustering and feature selection is presented. It implements a wrapper strategy for feature selection, in the sense that the features are directly selected by optimizing the discriminative power of the used partitioning algorithm. On the technical side, we present an efficient optimization algorithm with guaranteed local convergence property. The only free parameter of this method is selected by a resampling-based stability analysis. Experiments with real-world datasets demonstrate that our method is able to infer both meaningful partitions and meaningful subsets of features.

Density estimation with Gaussian Mixture Models is a popular generative technique used also for clustering. We develop a framework to incorporate side information in the form of equivalence constraints into the model estimation procedure. Equivalence constraints are defined on pairs of data points, indicating whether the points arise from the same source (positive constraints) or from different sources (negative constraints). Such constraints can be gathered automatically in some learning problems, and are a natural form of supervision in others. For the estimation of model parameters we present a closed form EM procedure which handles positive constraints, and a Generalized EM procedure using a Markov net which handles negative constraints. Using publicly available data sets we demonstrate that such side information can lead to considerable improvement in clustering tasks, and that our algorithm is preferable to two other suggested methods using the same type of side information.

We present a modified version of the perceptron learning algorithm (PLA) which solves semidefinite programs (SDPs) in polynomial time. The algorithm is based on the following three observations: (i) Semidefinite programs are linear programs with infinitely many (linear) constraints; (ii) every linear program can be solved by a sequence of constraint satisfaction problems with linear constraints; (iii) in general, the perceptron learning algorithm solves a constraint satisfaction problem with linear constraints in finitely many updates. Combining the PLA with a probabilistic rescaling algorithm (which, on average, increases the size of the feasable region) results in a probabilistic algorithm for solving SDPs that runs in polynomial time. We present preliminary results which demonstrate that the algorithm works, but is not competitive with state-of-the-art interior point methods.

We consider the problem of reconstructing patterns from a feature map. Learning algorithms using kernels to operate in a reproducing kernel Hilbert space (RKHS) express their solutions in terms of input points mapped into the RKHS. We introduce a technique based on kernel principal component analysis and regression to reconstruct corresponding patterns in the input space (aka pre-images) and review its performance in several applications requiring the construction of pre-images. The introduced technique avoids difficult and/or unstable numerical optimization, is easy to implement and, unlike previous methods, permits the computation of pre-images in discrete input spaces.

We present a novel method for approximate inference in Bayesian models and regularized risk functionals. It is based on the propagation of mean and variance derived from the Laplace approximation of conditional probabilities in factorizing distributions, much akin to Minka's Expectation Propagation. In the jointly normal case, it coincides with the latter and belief propagation, whereas in the general case, it provides an optimization strategy containing Support Vector chunking, the Bayes Committee Machine, and Gaussian Process chunking as special cases.

Discrete Fourier transforms and other related Fourier methods have been practically implementable due to the fast Fourier transform (FFT). However there are many situations where doing fast Fourier transforms without complete data would be desirable. In this paper it is recognised that formulating the FFT algorithm as a belief network allows suitable priors to be set for the Fourier coefficients. Furthermore efficient generalised belief propagation methods between clusters of four nodes enable the Fourier coefficients to be inferred and the missing data to be estimated in near to O(n log n) time, where n is the total of the given and missing data points. This method is compared with a number of common approaches such as setting missing data to zero or to interpolation. It is tested on generated data and for a Fourier analysis of a damaged audio signal.

Rao-Blackwellization is an approximation technique for probabilistic inference that flexibly combines exact inference with sampling. It is useful in models where conditioning on some of the variables leaves a simpler inference problem that can be solved tractably. This paper presents Sample Propagation, an efficient implementation of Rao-Blackwellized approximate inference for a large class of models. Sample Propagation tightly integrates sampling with message passing in a junction tree, and is named for its simple, appealing structure: it walks the clusters of a junction tree, sampling some of the current cluster's variables and then passing a message to one of its neighbors. We discuss the application of Sample Propagation to conditional Gaussian inference problems such as switching linear dynamical systems.

In models that define probabilities via energies, maximum likelihood learning typically involves using Markov Chain Monte Carlo to sample from the model's distribution. If the Markov chain is started at the data distribution, learning often works well even if the chain is only run for a few time steps [3]. But if the data distribution contains modes separated by regions of very low density, brief MCMC will not ensure that different modes have the correct relative energies because it cannot move particles from one mode to another. We show how to improve brief MCMC by allowing long-range moves that are suggested by the data distribution. If the model is approximately correct, these long-range moves have a reasonable acceptance rate.