In system identification both the input and the output of a system are available to an observer and an algorithm is sought to identify parameters of a hypothesized model of that system. Here we present a novel formal methodology for identifying dendritic processing in a neural circuit consisting of a linear dendritic processing filter in cascade with a spiking neuron model. The input to the circuit is an analog signal that belongs to the space of bandlimited functions. The output is a time sequence associated with the spike train. We derive an algorithm for identification of the dendritic processing filter and reconstruct its kernel with arbitrary precision.

We present a model that describes the structure in the responses of different brain areas to a set of stimuli in terms of stimulus categories" (clusters of stimuli) and "functional units" (clusters of voxels). We assume that voxels within a unit respond similarly to all stimuli from the same category, and design a nonparametric hierarchical model to capture inter-subject variability among the units. The model explicitly captures the relationship between brain activations and fMRI time courses. A variational inference algorithm derived based on the model can learn categories, units, and a set of unit-category activation probabilities from data. When applied to data from an fMRI study of object recognition, the method finds meaningful and consistent clusterings of stimuli into categories and voxels into units."

We describe a model based on a Boltzmann machine with third-order connections that can learn how to accumulate information about a shape over several fixations. The model uses a retina that only has enough high resolution pixels to cover a small area of the image, so it must decide on a sequence of fixations and it must combine the glimpse" at each fixation with the location of the fixation before integrating the information with information from other glimpses of the same object. We evaluate this model on a synthetic dataset and two image classification datasets, showing that it can perform at least as well as a model trained on whole images."

Matching functional brain regions across individuals is a challenging task, largely due to the variability in their location and extent. It is particularly difficult, but highly relevant, for patients with pathologies such as brain tumors, which can cause substantial reorganization of functional systems. In such cases spatial registration based on anatomical data is only of limited value if the goal is to establish correspondences of functional areas among different individuals, or to localize potentially displaced active regions. Rather than rely on spatial alignment, we propose to perform registration in an alternative space whose geometry is governed by the functional interaction patterns in the brain. We first embed each brain into a functional map that reflects connectivity patterns during a fMRI experiment. The resulting functional maps are then registered, and the obtained correspondences are propagated back to the two brains. In application to a language fMRI experiment, our preliminary results suggest that the proposed method yields improved functional correspondences across subjects. This advantage is pronounced for subjects with tumors that affect the language areas and thus cause spatial reorganization of the functional regions.

Markov networks (MNs) can incorporate arbitrarily complex features in modeling relational data. However, this flexibility comes at a sharp price of training an exponentially complex model. To address this challenge, we propose a novel relational learning approach, which consists of a restricted class of relational MNs (RMNs) called relation tree-based RMN (treeRMN), and an efficient Hidden Variable Detection algorithm called Contrastive Variable Induction (CVI). On one hand, the restricted treeRMN only considers simple (e.g., unary and pairwise) features in relational data and thus achieves computational efficiency; and on the other hand, the CVI algorithm efficiently detects hidden variables which can capture long range dependencies. Therefore, the resultant approach is highly efficient yet does not sacrifice its expressive power. Empirical results on four real datasets show that the proposed relational learning method can achieve similar prediction quality as the state-of-the-art approaches, but is significantly more efficient in training; and the induced hidden variables are semantically meaningful and crucial to improve the training speed and prediction qualities of treeRMNs.

We propose a discriminative model for recognizing group activities. Our model jointly captures the group activity, the individual person actions, and the interactions among them. Two new types of contextual information, group-person interaction and person-person interaction, are explored in a latent variable framework. Different from most of the previous latent structured models which assume a predefined structure for the hidden layer, e.g. a tree structure, we treat the structure of the hidden layer as a latent variable and implicitly infer it during learning and inference. Our experimental results demonstrate that by inferring this contextual information together with adaptive structures, the proposed model can significantly improve activity recognition performance.

A method for computing the rarity of latent fingerprints represented by minutiae is given. It allows determining the probability of finding a match for an evidence print in a database of n known prints. The probability of random correspondence between evidence and database is determined in three procedural steps. In the registration step the latent print is aligned by finding its core point; which is done using a procedure based on a machine learning approach based on Gaussian processes. In the evidence probability evaluation step a generative model based on Bayesian networks is used to determine the probability of the evidence; it takes into account both the dependency of each minutia on nearby minutiae and the confidence of their presence in the evidence. In the specific probability of random correspondence step the evidence probability is used to determine the probability of match among n for a given tolerance; the last evaluation is similar to the birthday correspondence probability for a specific birthday. The generative model is validated using a goodness-of-fit test evaluated with a standard database of fingerprints. The probability of random correspondence for several latent fingerprints are evaluated for varying numbers of minutiae.

In this paper we consider the problem of learning an n x n Kernel matrix from m similarity matrices under general convex loss. Past research have extensively studied the m =1 case and have derived several algorithms which require sophisticated techniques like ACCP, SOCP, etc. The existing algorithms do not apply if one uses arbitrary losses and often can not handle m > 1 case. We present several provably convergent iterative algorithms, where each iteration requires either an SVM or a Multiple Kernel Learning (MKL) solver for m > 1 case. One of the major contributions of the paper is to extend the well known Mirror Descent(MD) framework to handle Cartesian product of psd matrices. This novel extension leads to an algorithm, called EMKL, which solves the problem in O(m^2 log n) iterations; in each iteration one solves an MKL involving m kernels and m eigen-decomposition of n x n matrices. By suitably defining a restriction on the objective function, a faster version of EMKL is proposed, called REKL, which avoids the eigen-decomposition. An alternative to both EMKL and REKL is also suggested which requires only an SVM solver. Experimental results on real world protein data set involving several similarity matrices illustrate the efficacy of the proposed algorithms.

Latent variable models are a powerful tool for addressing several tasks in machine learning. However, the algorithms for learning the parameters of latent variable models are prone to getting stuck in a bad local optimum. To alleviate this problem, we build on the intuition that, rather than considering all samples simultaneously, the algorithm should be presented with the training data in a meaningful order that facilitates learning. The order of the samples is determined by how easy they are. The main challenge is that often we are not provided with a readily computable measure of the easiness of samples. We address this issue by proposing a novel, iterative self-paced learning algorithm where each iteration simultaneously selects easy samples and learns a new parameter vector. The number of samples selected is governed by a weight that is annealed until the entire training data has been considered. We empirically demonstrate that the self-paced learning algorithm outperforms the state of the art method for learning a latent structural SVM on four applications: object localization, noun phrase coreference, motif finding and handwritten digit recognition.

Computing a {\em maximum a posteriori} (MAP) assignment in graphical models is a crucial inference problem for many practical applications. Several provably convergent approaches have been successfully developed using linear programming (LP) relaxation of the MAP problem. We present an alternative approach, which transforms the MAP problem into that of inference in a finite mixture of simple Bayes nets. We then derive the Expectation Maximization (EM) algorithm for this mixture that also monotonically increases a lower bound on the MAP assignment until convergence. The update equations for the EM algorithm are remarkably simple, both conceptually and computationally, and can be implemented using a graph-based message passing paradigm similar to max-product computation. We experiment on the real-world protein design dataset and show that EM's convergence rate is significantly higher than the previous LP relaxation based approach MPLP. EM achieves a solution quality within $95$\% of optimal for most instances and is often an order-of-magnitude faster than MPLP.