Hypothesis testing on signals defined on surfaces (such as the cortical surface) is a fundamental component of a variety of studies in Neuroscience. The goal here is to identify regions that exhibit changes as a function of the clinical condition under study. As the clinical questions of interest move towards identifying very early signs of diseases, the corresponding statistical differences at the group level invariably become weaker and increasingly hard to identify. Indeed, after a multiple comparisons correction is adopted (to account for correlated statistical tests over all surface points), very few regions may survive. In contrast to hypothesis tests on point-wise measurements, in this paper, we make the case for performing statistical analysis on multi-scale shape descriptors that characterize the local topological context of the signal around each surface vertex. Our descriptors are based on recent results from harmonic analysis, that show how wavelet theory extends to non-Euclidean settings (i.e., irregular weighted graphs). We provide strong evidence that these descriptors successfully pick up group-wise differences, where traditional methods either fail or yield unsatisfactory results. Other than this primary application, we show how the framework allows performing cortical surface smoothing in the native space without mappint to a unit sphere.

A key problem in statistics and machine learning is the determination of network structure from data. We consider the case where the structure of the graph to be reconstructed is known to be scale-free. We show that in such cases it is natural to formulate structured sparsity inducing priors using submodular functions, and we use their Lovasz extension to obtain a convex relaxation. For tractable classes such as Gaussian graphical models, this leads to a convex optimization problem that can be efficiently solved. We show that our method results in an improvement in the accuracy of reconstructed networks for synthetic data. We also show how our prior encourages scale-free reconstructions on a bioinfomatics dataset.

Recent work in unsupervised feature learning and deep learning has shown that being able to train large models can dramatically improve performance. In this paper, we consider the problem of training a deep network with billions of parameters using tens of thousands of CPU cores. We have developed a software framework called DistBelief that can utilize computing clusters with thousands of machines to train large models. Within this framework, we have developed two algorithms for large-scale distributed training: (i) Downpour SGD, an asynchronous stochastic gradient descent procedure supporting a large number of model replicas, and (ii) Sandblaster, a framework that supports for a variety of distributed batch optimization procedures, including a distributed implementation of L-BFGS. Downpour SGD and Sandblaster L-BFGS both increase the scale and speed of deep network training. We have successfully used our system to train a deep network 100x larger than previously reported in the literature, and achieves state-of-the-art performance on ImageNet, a visual object recognition task with 16 million images and 21k categories. We show that these same techniques dramatically accelerate the training of a more modestly sized deep network for a commercial speech recognition service. Although we focus on and report performance of these methods as applied to training large neural networks, the underlying algorithms are applicable to any gradient-based machine learning algorithm.

This paper describes a new approach for computing nonnegative matrix factorizations (NMFs) with linear programming. The key idea is a data-driven model for the factorization, in which the most salient features in the data are used to express the remaining features. More precisely, given a data matrix X, the algorithm identifies a matrix C that satisfies X = CX and some linear constraints. The matrix C selects features, which are then used to compute a low-rank NMF of X. A theoretical analysis demonstrates that this approach has the same type of guarantees as the recent NMF algorithm of Arora et al.~(2012). In contrast with this earlier work, the proposed method has (1) better noise tolerance, (2) extends to more general noise models, and (3) leads to efficient, scalable algorithms. Experiments with synthetic and real datasets provide evidence that the new approach is also superior in practice. An optimized C++ implementation of the new algorithm can factor a multi-Gigabyte matrix in a matter of minutes.

This paper focuses on the problem of learning binary codes for efficient retrieval of high-dimensional nonnegative data that arises in vision and text applications where counts or frequencies are used as features. The similarity of such feature vectors is commonly measured using the cosine of the angle between them. In this work, we introduce a novel angular quantization-based binary coding (AQBC) technique for such data and analyze its properties. In its most basic form, AQBC works by mapping each nonnegative feature vector onto the vertex of the binary hypercubewith which it has the smallest angle. Even though the number of vertices (quantization landmarks) in this scheme grows exponentially with data dimensionalityd, we propose a method for mapping feature vectors to their smallest-angle binary vertices that scales as O(d log d). Further, we propose a method for learning a linear transformation of the data to minimize the quantization error,and show that it results in improved binary codes. Experiments on image and text datasets show that the proposed AQBC method outperforms the state of the art.

We present a novel marginalized particle Gaussian process (MPGP) regression, which provides a fast, accurate online Bayesian filtering framework to model the latent function. Using a state space model established by the data construction procedure, our MPGP recursively filters out the estimation of hidden function values by a Gaussian mixture. Meanwhile, it provides a new online method for training hyperparameters with a number of weighted particles. We demonstrate the estimated performance of our MPGP on both simulated and real large data sets. The results show that our MPGP is a robust estimation algorithm with high computational efficiency, which outperforms other state-of-art sparse GP methods.

Approaches to audio classification and retrieval tasks largely rely on detectionbased discriminativemodels. We submit that such models make a simplistic assumption inmapping acoustics directly to semantics, whereas the actual process is likely more complex. We present a generative model that maps acoustics in a hierarchical manner to increasingly higher-level semantics. Our model has two layers with the first layer modeling generalized sound units with no clear semantic associations, while the second layer models local patterns over these sound units. We evaluate our model on a large-scale retrieval task from TRECVID 2011, and report significant improvements over standard baselines.

We present a multi-task learning approach to jointly estimate the means of multiple independent data sets. The proposed multi-task averaging (MTA) algorithm results in a convex combination of the single-task averages. We derive the optimal amount of regularization, and show that it can be effectively estimated. Simulations and real data experiments demonstrate that MTA both maximum likelihood and James-Stein estimators, and that our approach to estimating the amount of regularization rivals cross-validation in performance but is more computationally efficient.

The Lovasz $\theta$ function of a graph, is a fundamental tool in combinatorial optimization and approximation algorithms. Computing $\theta$ involves solving a SDP and is extremely expensive even for moderately sized graphs. In this paper we establish that the Lovasz $\theta$ function is equivalent to a kernel learning problem related to one class SVM. This interesting connection opens up many opportunities bridging graph theoretic algorithms and machine learning. We show that there exist graphs, which we call $SVM-\theta$ graphs, on which the Lovasz $\theta$ function can be approximated well by a one-class SVM. This leads to a novel use of SVM techniques to solve algorithmic problems in large graphs e.g. identifying a planted clique of size $\Theta({\sqrt{n}})$ in a random graph $G(n,\frac{1}{2})$. A classic approach for this problem involves computing the $\theta$ function, however it is not scalable due to SDP computation. We show that the random graph with a planted clique is an example of $SVM-\theta$ graph, and as a consequence a SVM based approach easily identifies the clique in large graphs and is competitive with the state-of-the-art. Further, we introduce the notion of a ''common orthogonal labeling'' which extends the notion of a ''orthogonal labelling of a single graph (used in defining the $\theta$ function) to multiple graphs. The problem of finding the optimal common orthogonal labelling is cast as a Multiple Kernel Learning problem and is used to identify a large common dense region in multiple graphs. The proposed algorithm achieves an order of magnitude scalability compared to the state of the art.

Diversified ranking is a fundamental task in machine learning. It is broadly applicable in many real world problems, e.g., information retrieval, team assembling, product search, etc. In this paper, we consider a generic setting where we aim to diversify the top-k ranking list based on an arbitrary relevance function and an arbitrary similarity function among all the examples. We formulate it as an optimization problem and show that in general it is NP-hard. Then, we show that for a large volume of the parameter space, the proposed objective function enjoys the diminishing returns property, which enables us to design a scalable, greedy algorithm to find the near-optimal solution. Experimental results on real data sets demonstrate the effectiveness of the proposed algorithm.