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Density Adaptive Parallel Clustering

arXiv.org Machine Learning

In this paper we are going to introduce a new nearest neighbours based approach to clustering, and compare it with previous solutions; the resulting algorithm, which takes inspiration from both DBscan and minimum spanning tree approaches, is deterministic but proves simpler, faster and doesnt require to set in advance a value for k, the number of clusters.


Universal Matrix Completion

arXiv.org Machine Learning

The problem of low-rank matrix completion has recently generated a lot of interest leading to several results that offer exact solutions to the problem. However, in order to do so, these methods make assumptions that can be quite restrictive in practice. More specifically, the methods assume that: a) the observed indices are sampled uniformly at random, and b) for every new matrix, the observed indices are sampled afresh. In this work, we address these issues by providing a universal recovery guarantee for matrix completion that works for a variety of sampling schemes. In particular, we show that if the set of sampled indices come from the edges of a bipartite graph with large spectral gap (i.e. gap between the first and the second singular value), then the nuclear norm minimization based method exactly recovers all low-rank matrices that satisfy certain incoherence properties. Moreover, we also show that under certain stricter incoherence conditions, $O(nr^2)$ uniformly sampled entries are enough to recover any rank-$r$ $n\times n$ matrix, in contrast to the $O(nr\log n)$ sample complexity required by other matrix completion algorithms as well as existing analyses of the nuclear norm method.


Beyond Disagreement-based Agnostic Active Learning

arXiv.org Machine Learning

We study agnostic active learning, where the goal is to learn a classifier in a pre-specified hypothesis class interactively with as few label queries as possible, while making no assumptions on the true function generating the labels. The main algorithms for this problem are {\em{disagreement-based active learning}}, which has a high label requirement, and {\em{margin-based active learning}}, which only applies to fairly restricted settings. A major challenge is to find an algorithm which achieves better label complexity, is consistent in an agnostic setting, and applies to general classification problems. In this paper, we provide such an algorithm. Our solution is based on two novel contributions -- a reduction from consistent active learning to confidence-rated prediction with guaranteed error, and a novel confidence-rated predictor.


A Convex Formulation for Learning Scale-Free Networks via Submodular Relaxation

arXiv.org Machine Learning

A key problem in statistics and machine learning is the determination of network structure from data. We consider the case where the structure of the graph to be reconstructed is known to be scale-free. We show that in such cases it is natural to formulate structured sparsity inducing priors using submodular functions, and we use their Lov\'asz extension to obtain a convex relaxation. For tractable classes such as Gaussian graphical models, this leads to a convex optimization problem that can be efficiently solved. We show that our method results in an improvement in the accuracy of reconstructed networks for synthetic data. We also show how our prior encourages scale-free reconstructions on a bioinfomatics dataset.


Efficient Classification for Metric Data

arXiv.org Machine Learning

Recent advances in large-margin classification of data residing in general metric spaces (rather than Hilbert spaces) enable classification under various natural metrics, such as string edit and earthmover distance. A general framework developed for this purpose by von Luxburg and Bousquet [JMLR, 2004] left open the questions of computational efficiency and of providing direct bounds on generalization error. We design a new algorithm for classification in general metric spaces, whose runtime and accuracy depend on the doubling dimension of the data points, and can thus achieve superior classification performance in many common scenarios. The algorithmic core of our approach is an approximate (rather than exact) solution to the classical problems of Lipschitz extension and of Nearest Neighbor Search. The algorithm's generalization performance is guaranteed via the fat-shattering dimension of Lipschitz classifiers, and we present experimental evidence of its superiority to some common kernel methods. As a by-product, we offer a new perspective on the nearest neighbor classifier, which yields significantly sharper risk asymptotics than the classic analysis of Cover and Hart [IEEE Trans. Info. Theory, 1967].


Finito: A Faster, Permutable Incremental Gradient Method for Big Data Problems

arXiv.org Machine Learning

Recent advances in optimization theory have shown that smooth strongly convex finite sums can be minimized faster than by treating them as a black box "batch" problem. In this work we introduce a new method in this class with a theoretical convergence rate four times faster than existing methods, for sums with sufficiently many terms. This method is also amendable to a sampling without replacement scheme that in practice gives further speed-ups. We give empirical results showing state of the art performance.


An eigenanalysis of data centering in machine learning

arXiv.org Machine Learning

Many pattern recognition methods rely on statistical information from centered data, with the eigenanalysis of an empirical central moment, such as the covariance matrix in principal component analysis (PCA), as well as partial least squares regression, canonical-correlation analysis and Fisher discriminant analysis. Recently, many researchers advocate working on non-centered data. This is the case for instance with the singular value decomposition approach, with the (kernel) entropy component analysis, with the information-theoretic learning framework, and even with nonnegative matrix factorization. Moreover, one can also consider a non-centered PCA by using the second-order non-central moment. The main purpose of this paper is to bridge the gap between these two viewpoints in designing machine learning methods. To provide a study at the cornerstone of kernel-based machines, we conduct an eigenanalysis of the inner product matrices from centered and non-centered data. We derive several results connecting their eigenvalues and their eigenvectors. Furthermore, we explore the outer product matrices, by providing several results connecting the largest eigenvectors of the covariance matrix and its non-centered counterpart. These results lay the groundwork to several extensions beyond conventional centering, with the weighted mean shift, the rank-one update, and the multidimensional scaling. Experiments conducted on simulated and real data illustrate the relevance of this work.


Rate-Optimal Detection of Very Short Signal Segments

arXiv.org Machine Learning

Motivated by a range of applications in engineering and genomics, we consider in this paper detection of very short signal segments in three settings: signals with known shape, arbitrary signals, and smooth signals. Optimal rates of detection are established for the three cases and rate-optimal detectors are constructed. The detectors are easily implementable and are based on scanning with linear and quadratic statistics. Our analysis reveals both similarities and differences in the strategy and fundamental difficulty of detection among these three settings.


Biclustering Via Sparse Clustering

arXiv.org Machine Learning

In many situations it is desirable to identify clusters that differ with respect to only a subset of features. Such clusters may represent homogeneous subgroups of patients with a disease, such as cancer or chronic pain. We define a bicluster to be a submatrix U of a larger data matrix X such that the features and observations in U differ from those not contained in U. For example, the observations in U could have different means or variances with respect to the features in U. We propose a general framework for biclustering based on the sparse clustering method of Witten and Tibshirani (2010). We develop a method for identifying features that belong to biclusters. This framework can be used to identify biclusters that differ with respect to the means of the features, the variance of the features, or more general differences. We apply these methods to several simulated and real-world data sets and compare the results of our method with several previously published methods. The results of our method compare favorably with existing methods with respect to both predictive accuracy and computing time.


Asynchronous Anytime Sequential Monte Carlo

arXiv.org Machine Learning

We introduce a new sequential Monte Carlo algorithm we call the particle cascade. The particle cascade is an asynchronous, anytime alternative to traditional particle filtering algorithms. It uses no barrier synchronizations which leads to improved particle throughput and memory efficiency. It is an anytime algorithm in the sense that it can be run forever to emit an unbounded number of particles while keeping within a fixed memory budget. We prove that the particle cascade is an unbiased marginal likelihood estimator which means that it can be straightforwardly plugged into existing pseudomarginal methods.