Technology
A Block-Coordinate Descent Approach for Large-scale Sparse Inverse Covariance Estimation
Treister, Eran, Turek, Javier S.
The sparse inverse covariance estimation problem arises in many statistical applications in machine learning and signal processing. In this problem, the inverse of a covariance matrix of a multivariate normal distribution is estimated, assuming that it is sparse. An $\ell_1$ regularized log-determinant optimization problem is typically solved to approximate such matrices. Because of memory limitations, most existing algorithms are unable to handle large scale instances of this problem. In this paper we present a new block-coordinate descent approach for solving the problem for large-scale data sets. Our method treats the sought matrix block-by-block using quadratic approximations, and we show that this approach has advantages over existing methods in several aspects. Numerical experiments on both synthetic and real gene expression data demonstrate that our approach outperforms the existing state of the art methods, especially for large-scale problems.
Localized Data Fusion for Kernel k-Means Clustering with Application to Cancer Biology
Gรถnen, Mehmet, Margolin, Adam A.
In many modern applications from, for example, bioinformatics and computer vision, samples have multiple feature representations coming from different data sources. Multiview learning algorithms try to exploit all these available information to obtain a better learner in such scenarios. In this paper, we propose a novel multiple kernel learning algorithm that extends kernel k-means clustering to the multiview setting, which combines kernels calculated on the views in a localized way to better capture sample-specific characteristics of the data. We demonstrate the better performance of our localized data fusion approach on a human colon and rectal cancer data set by clustering patients. Our method finds more relevant prognostic patient groups than global data fusion methods when we evaluate the results with respect to three commonly used clinical biomarkers.
Multivariate f-divergence Estimation With Confidence
The problem of f-divergence estimation is important in the fields of machine learning, information theory, and statistics. While several divergence estimators exist, relatively few have known convergence properties. In particular, even for those estimators whose MSE convergence rates are known, the asymptotic distributions are unknown. We establish the asymptotic normality of a recently proposed ensemble estimator of f-divergence between two distributions from a finite number of samples. This estimator has MSE convergence rate of O(1/T), is simple to implement, and performs well in high dimensions. This theory enables us to perform divergence-based inference tasks such as testing equality of pairs of distributions based on empirical samples. We experimentally validate our theoretical results and, as an illustration, use them to empirically bound the best achievable classification error.
Conditional Swap Regret and Conditional Correlated Equilibrium
We introduce a natural extension of the notion of swap regret, conditional swap regret, that allows for action modifications conditioned on the playerโs action history. We prove a series of new results for conditional swap regret minimization. We present algorithms for minimizing conditional swap regret with bounded conditioning history. We further extend these results to the case where conditional swaps are considered only for a subset of actions. We also define a new notion of equilibrium, conditional correlated equilibrium, that is tightly connected to the notion of conditional swap regret: when all players follow conditional swap regret minimization strategies, then the empirical distribution approaches this equilibrium. Finally, we extend our results to the multi-armed bandit scenario.
Learning Mixtures of Submodular Functions for Image Collection Summarization
Tschiatschek, Sebastian, Iyer, Rishabh K., Wei, Haochen, Bilmes, Jeff A.
We address the problem of image collection summarization by learning mixtures of submodular functions. We argue that submodularity is very natural to this problem, and we show that a number of previously used scoring functions are submodular โ a property not explicitly mentioned in these publications. We provide classes of submodular functions capturing the necessary properties of summaries, namely coverage, likelihood, and diversity. To learn mixtures of these submodular functions as scoring functions, we formulate summarization as a supervised learning problem using large-margin structured prediction. Furthermore, we introduce a novel evaluation metric, which we call V-ROUGE, for automatic summary scoring. While a similar metric called ROUGE has been successfully applied to document summarization [14], no such metric was known for quantifying the quality of image collection summaries. We provide a new dataset consisting of 14 real-world image collections along with many human-generated ground truth summaries collected using mechanical turk. We also extensively compare our method with previously explored methods for this problem and show that our learning approach outperforms all competitors on this new dataset. This paper provides, to our knowledge, the first systematic approach for quantifying the problem of image collection summarization, along with a new dataset of image collections and human summaries.
A Filtering Approach to Stochastic Variational Inference
Stochastic variational inference (SVI) uses stochastic optimization to scale up Bayesian computation to massive data. We present an alternative perspective on SVI as approximate parallel coordinate ascent. SVI trades-off bias and variance to step close to the unknown true coordinate optimum given by batch variational Bayes (VB). We define a model to automate this process. The model infers the location of the next VB optimum from a sequence of noisy realizations. As a consequence of this construction, we update the variational parameters using Bayes rule, rather than a hand-crafted optimization schedule. When our model is a Kalman filter this procedure can recover the original SVI algorithm and SVI with adaptive steps. We may also encode additional assumptions in the model, such as heavy-tailed noise. By doing so, our algorithm outperforms the original SVI schedule and a state-of-the-art adaptive SVI algorithm in two diverse domains.
Multi-Step Stochastic ADMM in High Dimensions: Applications to Sparse Optimization and Matrix Decomposition
Sedghi, Hanie, Anandkumar, Anima, Jonckheere, Edmond
In this paper, we consider a multi-step version of the stochastic ADMM method with efficient guarantees for high-dimensional problems. We first analyze the simple setting, where the optimization problem consists of a loss function and a single regularizer (e.g. sparse optimization), and then extend to the multi-block setting with multiple regularizers and multiple variables (e.g. matrix decomposition into sparse and low rank components). For the sparse optimization problem, our method achieves the minimax rate of $O(s\log d/T)$ for $s$-sparse problems in $d$ dimensions in $T$ steps, and is thus, unimprovable by any method up to constant factors. For the matrix decomposition problem with a general loss function, we analyze the multi-step ADMM with multiple blocks. We establish $O(1/T)$ rate and efficient scaling as the size of matrix grows. For natural noise models (e.g. independent noise), our convergence rate is minimax-optimal. Thus, we establish tight convergence guarantees for multi-block ADMM in high dimensions. Experiments show that for both sparse optimization and matrix decomposition problems, our algorithm outperforms the state-of-the-art methods.
Efficient Optimization for Average Precision SVM
Mohapatra, Pritish, Jawahar, C.V., Kumar, M. Pawan
The accuracy of information retrieval systems is often measured using average precision (AP). Given a set of positive (relevant) and negative (non-relevant) samples, the parameters of a retrieval system can be estimated using the AP-SVM framework, which minimizes a regularized convex upper bound on the empirical AP loss. However, the high computational complexity of loss-augmented inference, which is required for learning an AP-SVM, prohibits its use with large training datasets. To alleviate this deficiency, we propose three complementary approaches. The first approach guarantees an asymptotic decrease in the computational complexity of loss-augmented inference by exploiting the problem structure. The second approach takes advantage of the fact that we do not require a full ranking during loss-augmented inference. This helps us to avoid the expensive step of sorting the negative samples according to their individual scores. The third approach approximates the AP loss over all samples by the AP loss over difficult samples (for example, those that are incorrectly classified by a binary SVM), while ensuring the correct classification of the remaining samples. Using the PASCAL VOC action classification and object detection datasets, we show that our approaches provide significant speed-ups during training without degrading the test accuracy of AP-SVM.
Greedy Subspace Clustering
Park, Dohyung, Caramanis, Constantine, Sanghavi, Sujay
We consider the problem of subspace clustering: given points that lie on or near the union of many low-dimensional linear subspaces, recover the subspaces. To this end, one first identifies sets of points close to the same subspace and uses the sets to estimate the subspaces. As the geometric structure of the clusters (linear subspaces) forbids proper performance of general distance based approaches such as K-means, many model-specific methods have been proposed. In this paper, we provide new simple and efficient algorithms for this problem. Our statistical analysis shows that the algorithms are guaranteed exact (perfect) clustering performance under certain conditions on the number of points and the affinity be- tween subspaces. These conditions are weaker than those considered in the standard statistical literature. Experimental results on synthetic data generated from the standard unions of subspaces model demonstrate our theory. We also show that our algorithm performs competitively against state-of-the-art algorithms on real-world applications such as motion segmentation and face clustering, with much simpler implementation and lower computational cost.
Beta-Negative Binomial Process and Exchangeable Random Partitions for Mixed-Membership Modeling
The beta-negative binomial process (BNBP), an integer-valued stochastic process, is employed to partition a count vector into a latent random count matrix. As the marginal probability distribution of the BNBP that governs the exchangeable random partitions of grouped data has not yet been developed, current inference for the BNBP has to truncate the number of atoms of the beta process. This paper introduces an exchangeable partition probability function to explicitly describe how the BNBP clusters the data points of each group into a random number of exchangeable partitions, which are shared across all the groups. A fully collapsed Gibbs sampler is developed for the BNBP, leading to a novel nonparametric Bayesian topic model that is distinct from existing ones, with simple implementation, fast convergence, good mixing, and state-of-the-art predictive performance.