Technology
Tree-Guided MCMC Inference for Normalized Random Measure Mixture Models
Normalized random measures (NRMs) provide a broad class of discrete random measures that are often used as priors for Bayesian nonparametric models. Dirichlet process is a well-known example of NRMs. Most of posterior inference methods for NRM mixture models rely on MCMC methods since they are easy to implement and their convergence is well studied. However, MCMC often suffers from slow convergence when the acceptance rate is low. Tree-based inference is an alternative deterministic posterior inference method, where Bayesian hierarchical clustering (BHC) or incremental Bayesian hierarchical clustering (IBHC) have been developed for DP or NRM mixture (NRMM) models, respectively. Although IBHC is a promising method for posterior inference for NRMM models due to its efficiency and applicability to online inference, its convergence is not guaranteed since it uses heuristics that simply selects the best solution after multiple trials are made. In this paper, we present a hybrid inference algorithm for NRMM models, which combines the merits of both MCMC and IBHC. Trees built by IBHC outlines partitions of data, which guides Metropolis-Hastings procedure to employ appropriate proposals. Inheriting the nature of MCMC, our tree-guided MCMC (tgMCMC) is guaranteed to converge, and enjoys the fast convergence thanks to the effective proposals guided by trees. Experiments on both synthetic and real-world datasets demonstrate the benefit of our method.
Accelerating pseudo-marginal Metropolis-Hastings by correlating auxiliary variables
Dahlin, Johan, Lindsten, Fredrik, Kronander, Joel, Schön, Thomas B.
Pseudo-marginal Metropolis-Hastings (pmMH) is a powerful method for Bayesian inference in models where the posterior distribution is analytical intractable or computationally costly to evaluate directly. It operates by introducing additional auxiliary variables into the model and form an extended target distribution, which then can be evaluated point-wise. In many cases, the standard Metropolis-Hastings is then applied to sample from the extended target and the sought posterior can be obtained by marginalisation. However, in some implementations this approach suffers from poor mixing as the auxiliary variables are sampled from an independent proposal. We propose a modification to the pmMH algorithm in which a Crank-Nicolson (CN) proposal is used instead. This results in that we introduce a positive correlation in the auxiliary variables. We investigate how to tune the CN proposal and its impact on the mixing of the resulting pmMH sampler. The conclusion is that the proposed modification can have a beneficial effect on both the mixing of the Markov chain and the computational cost for each iteration of the pmMH algorithm.
Vertex nomination schemes for membership prediction
Fishkind, D. E., Lyzinski, V., Pao, H., Chen, L., Priebe, C. E.
Suppose that a graph is realized from a stochastic block model where one of the blocks is of interest, but many or all of the vertices' block labels are unobserved. The task is to order the vertices with unobserved block labels into a ``nomination list'' such that, with high probability, vertices from the interesting block are concentrated near the list's beginning. We propose several vertex nomination schemes. Our basic - but principled - setting and development yields a best nomination scheme (which is a Bayes-Optimal analogue), and also a likelihood maximization nomination scheme that is practical to implement when there are a thousand vertices, and which is empirically near-optimal when the number of vertices is small enough to allow comparison to the best nomination scheme. We then illustrate the robustness of the likelihood maximization nomination scheme to the modeling challenges inherent in real data, using examples which include a social network involving human trafficking, the Enron Graph, a worm brain connectome and a political blog network.
Ethical Artificial Intelligence
This book-length article combines several peer reviewed papers and new material to analyze the issues of ethical artificial intelligence (AI). The behavior of future AI systems can be described by mathematical equations, which are adapted to analyze possible unintended AI behaviors and ways that AI designs can avoid them. This article makes the case for utility-maximizing agents and for avoiding infinite sets in agent definitions. It shows how to avoid agent self-delusion using model-based utility functions and how to avoid agents that corrupt their reward generators (sometimes called "perverse instantiation") using utility functions that evaluate outcomes at one point in time from the perspective of humans at a different point in time. It argues that agents can avoid unintended instrumental actions (sometimes called "basic AI drives" or "instrumental goals") by accurately learning human values. This article defines a self-modeling agent framework and shows how it can avoid problems of resource limits, being predicted by other agents, and inconsistency between the agent's utility function and its definition (one version of this problem is sometimes called "motivated value selection"). This article also discusses how future AI will differ from current AI, the politics of AI, and the ultimate use of AI to help understand the nature of the universe and our place in it.
A state vector algebra for algorithmic implementation of second-order logic
Lesnik, Dmitry, Schaefer, Tobias
We present a mathematical framework for mapping second-order logic relations onto a simple state vector algebra. Using this algebra, basic theorems of set theory can be proven in an algorithmic way, hence by an expert system. We illustrate the use of the algebra with simple examples and show that, in principle, all theorems of basic set theory can be recovered in an elementary way. The developed technique can be used for an automated theorem proving in the 1st and 2nd order logic.
Bayesian Optimization with Dimension Scheduling: Application to Biological Systems
Ulmasov, Doniyor, Baroukh, Caroline, Chachuat, Benoit, Deisenroth, Marc Peter, Misener, Ruth
Bayesian Optimization (BO) is a data-efficient method for global black-box optimization of an expensive-to-evaluate fitness function. BO typically assumes that computation cost of BO is cheap, but experiments are time consuming or costly. In practice, this allows us to optimize ten or fewer critical parameters in up to 1,000 experiments. But experiments may be less expensive than BO methods assume: In some simulation models, we may be able to conduct multiple thousands of experiments in a few hours, and the computational burden of BO is no longer negligible compared to experimentation time. To address this challenge we introduce a new Dimension Scheduling Algorithm (DSA), which reduces the computational burden of BO for many experiments. The key idea is that DSA optimizes the fitness function only along a small set of dimensions at each iteration. This DSA strategy (1) reduces the necessary computation time, (2) finds good solutions faster than the traditional BO method, and (3) can be parallelized straightforwardly. We evaluate the DSA in the context of optimizing parameters of dynamic models of microalgae metabolism and show faster convergence than traditional BO.
Resolving the Geometric Locus Dilemma for Support Vector Learning Machines
Capacity control, the bias/variance dilemma, and learning unknown functions from data, are all concerned with identifying effective and consistent fits of unknown geometric loci to random data points. A geometric locus is a curve or surface formed by points, all of which possess some uniform property. A geometric locus of an algebraic equation is the set of points whose coordinates are solutions of the equation. Any given curve or surface must pass through each point on a specified locus. This paper argues that it is impossible to fit random data points to algebraic equations of partially configured geometric loci that reference arbitrary Cartesian coordinate systems. It also argues that the fundamental curve of a linear decision boundary is actually a principal eigenaxis. It is shown that learning principal eigenaxes of linear decision boundaries involves finding a point of statistical equilibrium for which eigenenergies of principal eigenaxis components are symmetrically balanced with each other. It is demonstrated that learning linear decision boundaries involves strong duality relationships between a statistical eigenlocus of principal eigenaxis components and its algebraic forms, in primal and dual, correlated Hilbert spaces. Locus equations are introduced and developed that describe principal eigen-coordinate systems for lines, planes, and hyperplanes. These equations are used to introduce and develop primal and dual statistical eigenlocus equations of principal eigenaxes of linear decision boundaries. Important generalizations for linear decision boundaries are shown to be encoded within a dual statistical eigenlocus of principal eigenaxis components. Principal eigenaxes of linear decision boundaries are shown to encode Bayes' likelihood ratio for common covariance data and a robust likelihood ratio for all other data.
Accurate estimation of influenza epidemics using Google search data via ARGO
Yang, Shihao, Santillana, Mauricio, Kou, S. C.
Accurate real-time tracking of influenza outbreaks helps public health officials make timely and meaningful decisions that could save lives. We propose an influenza tracking model, ARGO (AutoRegression with GOogle search data), that uses publicly available online search data. In addition to having a rigorous statistical foundation, ARGO outperforms all previously available Google-search-based tracking models, including the latest version of Google Flu Trends, even though it uses only low-quality search data as input from publicly available Google Trends and Google Correlate websites. ARGO not only incorporates the seasonality in influenza epidemics but also captures changes in people's online search behavior over time. ARGO is also flexible, self-correcting, robust, and scalable, making it a potentially powerful tool that can be used for real-time tracking of other social events at multiple temporal and spatial resolutions.
Active Contextual Entropy Search
Contextual policy search allows adapting robotic movement primitives to different situations. For instance, a locomotion primitive might be adapted to different terrain inclinations or desired walking speeds. Such an adaptation is often achievable by modifying a small number of hyperparameters. However, learning, when performed on real robotic systems, is typically restricted to a small number of trials. Bayesian optimization has recently been proposed as a sample-efficient means for contextual policy search that is well suited under these conditions. In this work, we extend entropy search, a variant of Bayesian optimization, such that it can be used for active contextual policy search where the agent selects those tasks during training in which it expects to learn the most. Empirical results in simulation suggest that this allows learning successful behavior with less trials.
Fast clustering for scalable statistical analysis on structured images
Thirion, Bertrand, Hoyos-Idrobo, Andrés, Kahn, Jonas, Varoquaux, Gael
The use of brain images as markers for diseases or behavioral differences is challenged by the small effects size and the ensuing lack of power, an issue that has incited researchers to rely more systematically on large cohorts. Coupled with resolution increases, this leads to very large datasets. A striking example in the case of brain imaging is that of the Human Connectome Project: 20 Terabytes of data and growing. The resulting data deluge poses severe challenges regarding the tractability of some processing steps (discriminant analysis, multivariate models) due to the memory demands posed by these data. In this work, we revisit dimension reduction approaches, such as random projections, with the aim of replacing costly function evaluations by cheaper ones while decreasing the memory requirements. Specifically, we investigate the use of alternate schemes, based on fast clustering, that are well suited for signals exhibiting a strong spatial structure, such as anatomical and functional brain images. Our contribution is twofold: i) we propose a linear-time clustering scheme that bypasses the percolation issues inherent in these algorithms and thus provides compressions nearly as good as traditional quadratic-complexity variance-minimizing clustering schemes, ii) we show that cluster-based compression can have the virtuous effect of removing high-frequency noise, actually improving subsequent estimations steps. As a consequence, the proposed approach yields very accurate models on several large-scale problems yet with impressive gains in computational efficiency, making it possible to analyze large datasets.