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Mapping Tractography Across Subjects

arXiv.org Machine Learning

Diffusion magnetic resonance imaging (dMRI) and tractography provide means to study the anatomical structures within the white matter of the brain. When studying tractography data across subjects, it is usually necessary to align, i.e. to register, tractographies together. This registration step is most often performed by applying the transformation resulting from the registration of other volumetric images (T1, FA). In contrast with registration methods that "transform" tractographies, in this work, we try to find which streamline in one tractography correspond to which streamline in the other tractography, without any transformation. In other words, we try to find a "mapping" between the tractographies. We propose a graph-based solution for the tractography mapping problem and we explain similarities and differences with the related well-known graph matching problem. Specifically, we define a loss function based on the pairwise streamline distance and reformulate the mapping problem as combinatorial optimization of that loss function. We show preliminary promising results where we compare the proposed method, implemented with simulated annealing, against a standard registration techniques in a task of segmentation of the corticospinal tract.


High Dimensional Data Modeling Techniques for Detection of Chemical Plumes and Anomalies in Hyperspectral Images and Movies

arXiv.org Machine Learning

We briefly review recent progress in techniques for modeling and analyzing hyperspectral images and movies, in particular for detecting plumes of both known and unknown chemicals. For detecting chemicals of known spectrum, we extend the technique of using a single subspace for modeling the background to a "mixture of subspaces" model to tackle more complicated background. Furthermore, we use partial least squares regression on a resampled training set to boost performance. For the detection of unknown chemicals we view the problem as an anomaly detection problem, and use novel estimators with low-sampled complexity for intrinsically low-dimensional data in high-dimensions that enable us to model the "normal" spectra and detect anomalies. We apply these algorithms to benchmark data sets made available by the Automated Target Detection program co-funded by NSF, DTRA and NGA, and compare, when applicable, to current state-of-the-art algorithms, with favorable results.


Towards A Deeper Geometric, Analytic and Algorithmic Understanding of Margins

arXiv.org Artificial Intelligence

Given a matrix $A$, a linear feasibility problem (of which linear classification is a special case) aims to find a solution to a primal problem $w: A^Tw > \textbf{0}$ or a certificate for the dual problem which is a probability distribution $p: Ap = \textbf{0}$. Inspired by the continued importance of "large-margin classifiers" in machine learning, this paper studies a condition measure of $A$ called its \textit{margin} that determines the difficulty of both the above problems. To aid geometrical intuition, we first establish new characterizations of the margin in terms of relevant balls, cones and hulls. Our second contribution is analytical, where we present generalizations of Gordan's theorem, and variants of Hoffman's theorems, both using margins. We end by proving some new results on a classical iterative scheme, the Perceptron, whose convergence rates famously depends on the margin. Our results are relevant for a deeper understanding of margin-based learning and proving convergence rates of iterative schemes, apart from providing a unifying perspective on this vast topic.


Early Predictions of Movie Success: the Who, What, and When of Profitability

arXiv.org Artificial Intelligence

This paper proposes a decision support system to aid movie investment decisions at the early stage of movie productions. The system predicts the success of a movie based on its profitability by leveraging historical data from various sources. Using social network analysis and text mining techniques, the system automatically extracts several groups of features, including "who" are on the cast, "what" a movie is about, "when" a movie will be released, as well as "hybrid" features that match "who" with "what", and "when" with "what". Experiment results with movies during an 11-year period showed that the system outperforms benchmark methods by a large margin in predicting movie profitability. Novel features we proposed also made great contributions to the prediction. In addition to designing a decision support system with practical utilities, our analysis of key factors for movie profitability may also have implications for theoretical research on team performance and the success of creative work.


Statistical Inference, Learning and Models in Big Data

arXiv.org Machine Learning

The need for new methods to deal with big data is a common theme in most scientific fields, although its definition tends to vary with the context. Statistical ideas are an essential part of this, and as a partial response, a thematic program on statistical inference, learning, and models in big data was held in 2015 in Canada, under the general direction of the Canadian Statistical Sciences Institute, with major funding from, and most activities located at, the Fields Institute for Research in Mathematical Sciences. This paper gives an overview of the topics covered, describing challenges and strategies that seem common to many different areas of application, and including some examples of applications to make these challenges and strategies more concrete.


An Overview of Melanoma Detection in Dermoscopy Images Using Image Processing and Machine Learning

arXiv.org Machine Learning

The incidence of malignant melanoma continues to increase worldwide. This cancer can strike at any age; it is one of the leading causes of loss of life in young persons. Since this cancer is visible on the skin, it is potentially detectable at a very early stage when it is curable. New developments have converged to make fully automatic early melanoma detection a real possibility. First, the advent of dermoscopy has enabled a dramatic boost in clinical diagnostic ability to the point that melanoma can be detected in the clinic at the very earliest stages. The global adoption of this technology has allowed accumulation of large collections of dermoscopy images of melanomas and benign lesions validated by histopathology. The development of advanced technologies in the areas of image processing and machine learning have given us the ability to allow distinction of malignant melanoma from the many benign mimics that require no biopsy. These new technologies should allow not only earlier detection of melanoma, but also reduction of the large number of needless and costly biopsy procedures. Although some of the new systems reported for these technologies have shown promise in preliminary trials, widespread implementation must await further technical progress in accuracy and reproducibility. In this paper, we provide an overview of computerized detection of melanoma in dermoscopy images. First, we discuss the various aspects of lesion segmentation. Then, we provide a brief overview of clinical feature segmentation. Finally, we discuss the classification stage where machine learning algorithms are applied to the attributes generated from the segmented features to predict the existence of melanoma.


Matrix Completion from Fewer Entries: Spectral Detectability and Rank Estimation

arXiv.org Machine Learning

The completion of low rank matrices from few entries is a task with many practical applications. We consider here two aspects of this problem: detectability, i.e. the ability to estimate the rank $r$ reliably from the fewest possible random entries, and performance in achieving small reconstruction error. We propose a spectral algorithm for these two tasks called MaCBetH (for Matrix Completion with the Bethe Hessian). The rank is estimated as the number of negative eigenvalues of the Bethe Hessian matrix, and the corresponding eigenvectors are used as initial condition for the minimization of the discrepancy between the estimated matrix and the revealed entries. We analyze the performance in a random matrix setting using results from the statistical mechanics of the Hopfield neural network, and show in particular that MaCBetH efficiently detects the rank $r$ of a large $n\times m$ matrix from $C(r)r\sqrt{nm}$ entries, where $C(r)$ is a constant close to $1$. We also evaluate the corresponding root-mean-square error empirically and show that MaCBetH compares favorably to other existing approaches.


Robustness Analysis of Preconditioned Successive Projection Algorithm for General Form of Separable NMF Problem

arXiv.org Machine Learning

The successive projection algorithm (SPA) has been known to work well for separable nonnegative matrix factorization (NMF) problems arising in applications, such as topic extraction from documents and endmember detection in hyperspectral images. One of the reasons is in that the algorithm is robust to noise. Gillis and Vavasis showed in [SIAM J. Optim., 25(1), pp. 677-698, 2015] that a preconditioner can further enhance its noise robustness. The proof rested on the condition that the dimension $d$ and factorization rank $r$ in the separable NMF problem coincide with each other. However, it may be unrealistic to expect that the condition holds in separable NMF problems appearing in actual applications; in such problems, $d$ is usually greater than $r$. This paper shows, without the condition $d=r$, that the preconditioned SPA is robust to noise.


Synthetic Treebanking for Cross-Lingual Dependency Parsing

Journal of Artificial Intelligence Research

How do we parse the languages for which no treebanks are available? This contribution addresses the cross-lingual viewpoint on statistical dependency parsing, in which we attempt to make use of resource-rich source language treebanks to build and adapt models for the under-resourced target languages. We outline the benefits, and indicate the drawbacks of the current major approaches. We emphasize synthetic treebanking: the automatic creation of target language treebanks by means of annotation projection and machine translation. We present competitive results in cross-lingual dependency parsing using a combination of various techniques that contribute to the overall success of the method. We further include a detailed discussion about the impact of part-of-speech label accuracy on parsing results that provide guidance in practical applications of cross-lingual methods for truly under-resourced languages.


Utilisation of Metadata Fields and Query Expansion in Cross-Lingual Search of User-Generated Internet Video

Journal of Artificial Intelligence Research

Recent years have seen significant efforts in the area of Cross Language Information Retrieval (CLIR) for text retrieval. This work initially focused on formally published content, but more recently research has begun to concentrate on CLIR for informal social media content. However, despite the current expansion in online multimedia archives, there has been little work on CLIR for this content. While there has been some limited work on Cross-Language Video Retrieval (CLVR) for professional videos, such as documentaries or TV news broadcasts, there has to date, been no significant investigation of CLVR for the rapidly growing archives of informal user generated (UGC) content. Key differences between such UGC and professionally produced content are the nature and structure of the textual UGC metadata associated with it, as well as the form and quality of the content itself. In this setting, retrieval effectiveness may not only suffer from translation errors common to all CLIR tasks, but also recognition errors associated with the automatic speech recognition (ASR) systems used to transcribe the spoken content of the video and with the informality and inconsistency of the associated user-created metadata for each video. This work proposes and evaluates techniques to improve CLIR effectiveness of such noisy UGC content. Our experimental investigation shows that different sources of evidence, e.g. the content from different fields of the structured metadata, significantly affect CLIR effectiveness. Results from our experiments also show that each metadata field has a varying robustness to query expansion (QE) and hence can have a negative impact on the CLIR effectiveness. Our work proposes a novel adaptive QE technique that predicts the most reliable source for expansion and shows how this technique can be effective for improving the CLIR effectiveness for UGC content.