Goto

Collaborating Authors

 Technology


Agnostic Learning under Targeted Poisoning: Optimal Rates and the Role of Randomness

Neural Information Processing Systems

We study the problem of learning in the presence of an adversary that can corrupt an $\eta$ fraction of the training examples with the goal of causing failure on a specific test point. In the realizable setting, prior work established that the optimal error under such instance-targeted poisoning attacks scales as $\Theta(d\eta)$, where $d$ is the VC dimension of the hypothesis class [Hanneke, Karbasi, Mahmoody, Mehalel, and Moran (NeurIPS 2022)]. In this work, we resolve the corresponding question in the agnostic setting. We show that the optimal excess error is $\widetilde\Theta(\sqrt{d\eta})$, answering one of the main open problems left by Hanneke et al. To achieve this rate, it is necessary to use randomized learners: Hanneke et al.\ showed that deterministic learners can be forced to suffer error close to $1$ even under small amounts of poisoning. Perhaps surprisingly, our upper bound remains valid even when the learner's random bits are fully visible to the adversary. In the other direction, our lower bound is stronger than standard PAC-style bounds: instead of tailoring a hard distribution separately for each sample size, we exhibit a single fixed distribution under which the adversary can enforce an excess error of $\Omega(\sqrt{d\eta})$ infinitely often.



Noise-Robustness Through Noise: A Framework combining Asymmetric LoRA with Poisoning MoE

Neural Information Processing Systems

Current parameter-efficient fine-tuning methods for adapting pre-trained language models to downstream tasks are susceptible to interference from noisy data. Conventional noise-handling approaches either rely on laborious data pre-processing or employ model architecture modifications prone to error accumulation. In contrast to existing noise-process paradigms, we propose a noise-robust adaptation method via asymmetric LoRA poisoning experts (LoPE), a novel framework that enhances model robustness to noise only with generated noisy data. Drawing inspiration from the mixture-of-experts architecture, LoPE strategically integrates a dedicated poisoning expert in an asymmetric LoRA configuration. Through a two-stage paradigm, LoPE performs noise injection on the poisoning expert during fine-tuning to enhance its noise discrimination and processing ability. During inference, we selectively mask the dedicated poisoning expert to leverage purified knowledge acquired by normal experts for noise-robust output. Extensive experiments demonstrate that LoPE achieves strong performance and robustness purely through the low-cost noise injection, which completely eliminates the requirement of data cleaning.


BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model

Neural Information Processing Systems

Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel at representing sequences, they struggle with multi-step reasoning and lack transparent, biologically meaningful explanations. BioReason addresses this by tightly integrating a DNA foundation model with a large language model (LLM), enabling the LLM to directly interpret and reason over genomic information. Through supervised fine-tuning and reinforcement learning, BioReason learns to produce logical, biologically coherent deductions. It achieves major performance gains, boosting KEGG-based disease pathway prediction accuracy from 86% to 98% and improving variant effect prediction by an average of 15% over strong baselines. BioReason can reason over unseen biological entities and explain its decisions step by step, offering a transformative framework for interpretable, mechanistic AI in biology.


DualMPNN: Harnessing Structural Alignments for High-Recovery Inverse Protein Folding

Neural Information Processing Systems

Inverse protein folding addresses the challenge of designing amino acid sequences that fold into a predetermined tertiary structure, bridging geometric and evolutionary constraints to advance protein engineering. Inspired by the pivotal role of multiple sequence alignments (MSAs) in structure prediction models like AlphaFold, we hypothesize that structural alignments can provide an informative prior for inverse folding. In this study, we introduce DualMPNN, a dual-stream message passing neural network that leverages structurally homologous templates to guide amino acid sequence design of predefined query structures. DualMPNN processes the query and template proteins via two interactive branches, coupled through alignment-aware cross-stream attention mechanisms that enable exchange of geometric and co-evolutionary signals.


Under the Shadow: Exploiting Opacity Variation for Fine-grained Shadow Detection

Neural Information Processing Systems

Shadow characteristics are of great importance for scene understanding. Existing works mainly consider shadow regions as binary masks, often leading to imprecise detection results and suboptimal performance for scene understanding. We demonstrate that such an assumption oversimplifies light-object interactions in the scene, as the scene details under either hard or soft shadows remain visible to a certain degree. Based on this insight, we aim to reformulate the shadow detection paradigm from the opacity perspective, and introduce a new fine-grained shadow detection method. In particular, given an input image, we first propose a shadow opacity augmentation module to generate realistic images with varied shadow opacities. We then introduce a shadow feature separation module to learn the shadow position and opacity representations separately, followed by an opacity mask prediction module that fuses these representations and predicts fine-grained shadow detection results. In addition, we construct a new dataset with opacity-annotated shadow masks across varied scenarios. Extensive experiments demonstrate that our method outperforms the baselines qualitatively and quantitatively, enhancing a wide range of applications, including shadow removal, shadow editing, and 3D reconstruction.


Vid-SME: Membership Inference Attacks against Large Video Understanding Models

Neural Information Processing Systems

Multimodal large language models (MLLMs) demonstrates remarkable capabilities in handling complex multimodal tasks and are increasingly adopted in video understanding applications. However, their rapid advancement raises serious data privacy concerns, particularly given the potential inclusion of sensitive video content, such as personal recordings and surveillance footage, in their training datasets. Determining improperly used videos during training remains a critical and unresolved challenge. Despite considerable progress on membership inference attacks (MIAs) for text and image data in MLLMs, existing methods fail to generalize effectively to the video domain. These methods suffer from poor scalability as more frames are sampled and generally achieve negligible true positive rates at low false positive rates (TPR@Low FPR), mainly due to their failure to capture the inherent temporal variations of video frames and to account for model behavior differences as the number of frames varies.


Enhanced Self-Distillation Framework for Efficient Spiking Neural Network Training

Neural Information Processing Systems

However, conventional training methods based on surrogate gradients and Backpropagation Through Time (BPTT) not only lag behind Artificial Neural Networks (ANNs) in performance, but also incur significant computational and memory overheads that grow linearly with the temporal dimension. To enable high-performance SNN training under limited computational resources, we propose an enhanced self-distillation framework, jointly optimized with rate-based backpropagation. Specifically, the firing rates of intermediate SNN layers are projected onto lightweight ANN branches, and high-quality knowledge generated by the model itself is used to optimize substructures through the ANN pathways. Unlike traditional self-distillation paradigms, we observe that low-quality self-generated knowledge may hinder convergence. To address this, we decouple the teacher signal into reliable and unreliable components, ensuring that only reliable knowledge is used to guide the optimization of the model. Extensive experiments on CIFAR-10, CIFAR-100, CIFAR10-DVS, and ImageNet demonstrate that our method reduces training complexity while achieving high-performance SNN training.


Isotropic Noise in Stochastic and Quantum Convex Optimization

Neural Information Processing Systems

We consider the problem of minimizing a $d$-dimensional Lipschitz convex function using a stochastic gradient oracle. We introduce and motivate a setting where the noise of the stochastic gradient is isotropic in that it is bounded in every direction with high probability. We then develop an algorithm for this setting which improves upon prior results by a factor of $d$ in certain regimes, and as a corollary, achieves a new state-of-the-art complexity for sub-exponential noise. We give matching lower bounds (up to polylogarithmic factors) for both results. Additionally, we develop an efficient quantum isotropifier, a quantum algorithm which converts a variance-bounded quantum sampling oracle into one that outputs an unbiased estimate with isotropic error. Combining our results, we obtain improved dimension-dependent rates for quantum stochastic convex optimization.


MS-BART: Unified Modeling of Mass Spectra and Molecules for Structure Elucidation

Neural Information Processing Systems

Mass spectrometry (MS) plays a critical role in molecular identification, significantly advancing scientific discovery. However, structure elucidation from MS data remains challenging due to the scarcity of annotated spectra. While large-scale pretraining has proven effective in addressing data scarcity in other domains, applying this paradigm to mass spectrometry is hindered by the complexity and heterogeneity of raw spectral signals. To address this, we propose MS-BART, a unified modeling framework that maps mass spectra and molecular structures into a shared token vocabulary, enabling cross-modal learning through large-scale pretraining on reliably computed fingerprint-molecule datasets. Multi-task pretraining objectives further enhance MS-BART's generalization by jointly optimizing denoising and translation task.