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Manipulating 3D Molecules in a Fixed-Dimensional E(3)-Equivariant Latent Space

Neural Information Processing Systems

Medicinal chemists often optimize drugs considering their 3D structures and designing structurally distinct molecules that retain key features, such as shapes, pharmacophores, or chemical properties. Previous deep learning approaches address this through supervised tasks like molecule inpainting or property-guided optimization. In this work, we propose a flexible zero-shot molecule manipulation method by navigating in a shared latent space of 3D molecules. We introduce a Variational AutoEncoder (VAE) for 3D molecules, named MolFLAE, which learns a fixed-dimensional, E(3)-equivariant latent space independent of atom counts. MolFLAE encodes 3D molecules using an E(3)-equivariant neural network into fixed number of latent nodes, distinguished by learned embeddings. The latent space is regularized, and molecular structures are reconstructed via a Bayesian Flow Network (BFN) conditioned on the encoder's latent output. MolFLAE achieves competitive performance on standard unconditional 3D molecule generation benchmarks. Moreover, the latent space of MolFLAE enables zero-shot molecule manipulation, including atom number editing, structure reconstruction, and coordinated latent interpolation for both structure and properties. We further demonstrate our approach on a drug optimization task for the human glucocorticoid receptor, generating molecules with improved hydrophilicity while preserving key interactions, under computational evaluations.


Disentangling Latent Shifts of In-Context Learning with Weak Supervision

Neural Information Processing Systems

In-context learning (ICL) enables large language models to perform few-shot learning by conditioning on labeled examples in the prompt. Despite its flexibility, ICL suffers from instability -- especially as prompt length increases with more demonstrations. To address this, we treat ICL as a source of weak supervision and propose a parameter-efficient method that disentangles demonstration-induced latent shifts from those of the query. An ICL-based teacher generates pseudo-labels on unlabeled queries, while a student predicts them using only the query input, updating a lightweight adapter.


Geometry of Decision Making in Language Models

Neural Information Processing Systems

Large Language Models (LLMs) show strong generalization across diverse tasks, yet the internal decision-making processes behind their predictions remain opaque. In this work, we study the geometry of hidden representations in LLMs through the lens of intrinsic dimension (ID), focusing specifically on decision-making dynamics in a multiple-choice question answering (MCQA) setting. We perform a large-scale study, with 28 open-weight transformer models and estimate ID across layers using multiple estimators, while also quantifying per-layer performance on MCQA tasks. Our findings reveal a consistent ID pattern across models: early layers operate on low-dimensional manifolds, middle layers expand this space, and later layers compress it again, converging to decision-relevant representations. Together, these results suggest LLMs implicitly learn to project linguistic inputs onto structured, low-dimensional manifolds aligned with task-specific decisions, providing new geometric insights into how generalization and reasoning emerge in language models.


Orientation-anchored Hyper-Gaussian for 4D Reconstruction from Casual Videos

Neural Information Processing Systems

We present Orientation-anchored Gaussian Splatting (OriGS), a novel framework for high-quality 4D reconstruction from casually captured monocular videos. While recent advances extend 3D Gaussian Splatting to dynamic scenes via various motion anchors, such as graph nodes or spline control points, they often rely on low-rank assumptions and fall short in modeling complex, region-specific deformations inherent to unconstrained dynamics. OriGS addresses this by introducing a hyperdimensional representation grounded in scene orientation.


Recurrent Attention-based Token Selection for Efficient Streaming Video-LLMs

Neural Information Processing Systems

Video Large Language Models (Video-LLMs) excel at understanding videos in-context, assuming full access to the video when answering queries. However, these models face challenges in streaming scenarios where hour-long videos must be processed online, and questions need timely responses. In this work, we propose a training-free approach compatible with standard Video-LLMs, leveraging three key concepts: 1) LLM-informed selection of visual tokens to identify those that the LLM has attended to and contributed to its understanding of each short clip. Our attention-based selection allows us to discard up to ~95\% of unimportant visual tokens with minimal performance loss; 2) Hierarchical selection of tokens combined with natural language understanding of each processed clip; 3) Caption-based question answering for lightweight and accurate responses. Our method achieves state-of-the-art performance on streaming video benchmarks, striking a balance between efficiency and effectiveness.


CAML: Collaborative Auxiliary Modality Learning for Multi-Agent Systems

Neural Information Processing Systems

Multi-modal learning has emerged as a key technique for improving performance across domains such as autonomous driving, robotics, and reasoning. However, in certain scenarios, particularly in resource-constrained environments, some modalities available during training may be absent during inference. While existing frameworks effectively utilize multiple data sources during training and enable inference with reduced modalities, they are primarily designed for single-agent settings. This poses a critical limitation in dynamic environments such as connected autonomous vehicles (CAV), where incomplete data coverage can lead to decision-making blind spots. Conversely, some works explore multi-agent collaboration but without addressing missing modality at test time. To overcome these limitations, we propose Collaborative Auxiliary Modality Learning (CAML), a novel multi-modal multi-agent framework that enables agents to collaborate and share multi-modal data during training, while allowing inference with reduced modalities during testing. Experimental results in collaborative decision-making for CAV in accident-prone scenarios demonstrate that CAML achieves up to a 58.1% improvement in accident detection.



Rethinking Scale-Aware Temporal Encoding for Event-based Object Detection

Neural Information Processing Systems

Event cameras provide asynchronous, low-latency, and high-dynamic-range visual signals, making them ideal for real-time perception tasks such as object detection. However, effectively modeling the temporal dynamics of event streams remains a core challenge. Most existing methods follow frame-based detection paradigms, applying temporal modules only at high-level features, which limits early-stage temporal modeling. Transformer-based approaches introduce global attention to capture long-range dependencies, but often add unnecessary complexity and overlook fine-grained temporal cues. In this paper, we propose a CNN-RNN hybrid framework that rethinks temporal modeling for event-based object detection. Our approach is based on two key insights: (1) introducing recurrent modules at lower spatial scales to preserve detailed temporal information where events are most dense, and (2) utilizing Decoupled Deformable-enhanced Recurrent Layers specifically designed according to the inherent motion characteristics of event cameras to extract multiple spatiotemporal features, and performing independent downsampling at multiple spatiotemporal scales to enable flexible, scale-aware representation learning. These multi-scale features are then fused via a feature pyramid network to produce robust detection outputs. Experiments on Gen1, 1 Mpx and eTram dataset demonstrate that our approach achieves superior accuracy over recent transformer-based models, highlighting the importance of precise temporal feature extraction in early stages. This work offers a new perspective on designing architectures for event-driven vision beyond attention-centric paradigms.


EDBench: Large-Scale Electron Density Data for Molecular Modeling

Neural Information Processing Systems

Existing molecular machine learning force fields (MLFFs) generally focus on the learning of atoms, molecules, and simple quantum chemical properties (such as energy and force), but ignore the importance of electron density (ED) $\rho(r)$ in accurately understanding molecular force fields (MFFs). ED describes the probability of finding electrons at specific locations around atoms or molecules, which uniquely determines all ground state properties (such as energy, molecular structure, etc.) of interactive multi-particle systems according to the Hohenberg-Kohn theorem. However, the calculation of ED relies on the time-consuming first-principles density functional theory (DFT), which leads to the lack of large-scale ED data and limits its application in MLFFs. In this paper, we introduce EDBench, a large-scale, high-quality dataset of ED designed to advance learning-based research at the electronic scale. Built upon the PCQM4Mv2, EDBench provides accurate ED data, covering 3.3 million molecules. To comprehensively evaluate the ability of models to understand and utilize electronic information, we design a suite of ED-centric benchmark tasks spanning prediction, retrieval, and generation. Our evaluation of several state-of-the-art methods demonstrates that learning from EDBench is not only feasible but also achieves high accuracy. Moreover, we show that learning-based methods can efficiently calculate ED with comparable precision while significantly reducing the computational cost relative to traditional DFT calculations. All data and benchmarks from EDBench will be freely available, laying a robust foundation for ED-driven drug discovery and materials science.


DartQuant: Efficient Rotational Distribution Calibration for LLM Quantization

Neural Information Processing Systems

Quantization plays a crucial role in accelerating the inference of large-scale models, and rotational matrices have been shown to effectively improve quantization performance by smoothing outliers. However, end-to-end fine-tuning of rotational optimization algorithms incurs high computational costs and is prone to overfitting. To address this challenge, we propose an efficient distribution-aware rotational calibration method, DartQuant, which reduces the complexity of rotational optimization by constraining the distribution of the activations after rotation. This approach also effectively reduces reliance on task-specific losses, thereby mitigating the risk of overfitting. Additionally, we introduce the QR-Orth optimization scheme, which replaces expensive alternating optimization with a more efficient solution. In a variety of model quantization experiments, DartQuant demonstrates superior performance. Compared to existing methods, it achieves 47$\times$ acceleration and 10$\times$ memory savings for rotational optimization on a 70B model. Furthermore, it is the first to successfully complete rotational calibration for a 70B model on a single 3090 GPU, making quantization of large language models feasible in resource-constrained environments.