Technology
Embedding principle of homogeneous neural network for classification problem
In this paper, we study the Karush-Kuhn-Tucker (KKT) points of the associated maximum-margin problem in homogeneous neural networks, including fullyconnected and convolutional neural networks. In particular, We investigates the relationship between such KKT points across networks of different widths generated. We introduce and formalize the KKT point embedding principle, establishing that KKT points of a homogeneous network's max-margin problem (Pฮฆ) can be embedded into the KKT points of a larger network's problem (P ฮฆ) via specific linear isometric transformations. We rigorously prove this principle holds for neuron splitting in fully-connected networks and channel splitting in convolutional neural networks. Furthermore, we connect this static embedding to the dynamics of gradient flow training with smooth losses. We demonstrate that trajectories initiated from appropriately mapped points remain mapped throughout training and that the resulting ฯ-limit sets of directions are correspondingly mapped, thereby preserving the alignment with KKT directions dynamically when directional convergence occurs. We conduct several experiments to justify that trajectories are preserved. Our findings offer insights into the effects of network width, parameter redundancy, and the structural connections between solutions found via optimization in homogeneous networks of varying sizes.
You Can Trust Your Clustering Model: A Parameter-free Self-Boosting Plug-in for Deep Clustering
Recent deep clustering models have produced impressive clustering performance. However, a common issue with existing methods is the disparity between global and local feature structures. While local structures typically show strong consistency and compactness within class samples, global features often present intertwined boundaries and poorly separated clusters. Motivated by this observation, we propose DCBoost, a parameter-free plug-in designed to enhance the global feature structures of current deep clustering models. By harnessing reliable local structural cues, our method aims to elevate clustering performance effectively. Specifically, we first identify high-confidence samples through adaptive k-nearest neighborsbased consistency filtering, aiming to select a sufficient number of samples with high label reliability to serve as trustworthy anchors for self-supervision. Subsequently, these samples are utilized to compute a discriminative loss, which promotes both intra-class compactness and inter-class separability, to guide network optimization. Extensive experiments across various benchmark datasets showcase that our DCBoost significantly improves the clustering performance of diverse existing deep clustering models. Notably, our method improves the performance of current state-of-the-art baselines (e.g., ProPos) by more than 3% on average and amplifies the silhouette coefficient by over 7 .
Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNADesign via Constrained RL
Designing regulatory DNA sequences that achieve precise cell-type-specific gene expression is crucial for advancements in synthetic biology, gene therapy and precision medicine. Although transformer-based language models (LMs) can effectively capture patterns in regulatory DNA, their generative approaches often struggle to produce novel sequences with reliable cell-type-specific activity. Here, we introduce Ctrl-DNA, a novel constrained reinforcement learning (RL) framework tailored for designing regulatory DNA sequences with controllable cell-type specificity. By formulating regulatory sequence design as a biologically informed constrained optimization problem, we apply RL to autoregressive genomic LMs, enabling the models to iteratively refine sequences that maximize regulatory activity in targeted cell types while constraining off-target effects. Our evaluation on human promoters and enhancers demonstrates that Ctrl-DNA consistently outperforms existing generative and RL-based approaches, generating high-fitness regulatory sequences and achieving state-of-the-art cell-type specificity. Moreover, Ctrl-DNA-generated sequences capture key cell-type-specific transcription factor binding sites (TFBS), short DNA motifs recognized by regulatory proteins that control gene expression, demonstrating the biological plausibility of the generated sequences.
Orochi: Versatile Biomedical Image Processor
Deep learning has emerged as a pivotal tool for accelerating research in the life sciences, with the low-level processing of biomedical images (e.g., registration, fusion, restoration, super-resolution) being one of its most critical applications. Platforms such as ImageJ (Fiji) and napari have enabled the development of customized plugins for various models. However, these plugins are typically based on models that are limited to specific tasks and datasets, making them less practical for biologists. To address this challenge, we introduce Orochi, the first application-oriented, efficient, and versatile image processor designed to overcome these limitations. Orochi is pre-trained on patches/volumes extracted from the raw data of over 100 publicly available studies using our Random Multi-scale Sampling strategy.
Tractable Multinomial Logit Contextual Bandits with Non-Linear Utilities
We study the multinomial logit (MNL) contextual bandit problem for sequential assortment selection. Although most existing research assumes utility functions to be linear in item features, this linearity assumption restricts the modeling of intricate interactions between items and user preferences. A recent work [41] has investigated general utility function classes, yet its method faces fundamental tradeoffs between computational tractability and statistical efficiency. To address this limitation, we propose a computationally efficient algorithm for MNL contextual bandits leveraging the upper confidence bound principle, specifically designed for non-linear parametric utility functions, including those modeled by neural networks. Under a realizability assumption and a mild geometric condition on the utility function class, our algorithm achieves a regret bound of eO( T), where T denotes the total number of rounds. Our result establishes that sharp eO( T)-regret is attainable even with neural network-based utilities, without relying on strong assumptions such as neural tangent kernel approximations. To the best of our knowledge, our proposed method is the first computationally tractable algorithm for MNL contextual bandits with non-linear utilities that provably attains eO( T) regret.
SingleOctoNet: TableADemonstrationLarge-Scale Multi-Modal(NeurIPS 2025DatasetFormat)for Human Activity Understanding Grounded in Motion-Captured 3DPose Labels
Activities are color-coded by category, revealing modality-specific recognition patterns. A.2 HPE task details Figure 3 demonstrates representative examples of ground truth versus predicted 3D human poses from the best-performing baseline model across different input modalities. The selected samples showcase diverse poses that effectively highlight model performance characteristics.
Scale Multi Modal for Human Activity Understanding Grounded in Motion Captured Labels
We introduce OctoNet, a large-scale, multi-modal, multi-view human activity dataset designed to advance human activity understanding and multi-modal learning. OctoNet comprises 12 heterogeneous modalities (including RGB, depth, thermal cameras, infrared arrays, audio, millimeter-wave radar, Wi-Fi, IMU, and more) recorded from 41 participants under multi-view sensor setups, yielding over 67.72M synchronized frames. The data encompass 62 daily activities spanning structured routines, freestyle behaviors, human-environment interaction, healthcare tasks, etc. All modalities are annotated by high-fidelity 3D pose labels captured via a professional motion-capture system, allowing precise alignment and rich supervision across sensors and views. OctoNet is one of the most comprehensive datasets of its kind, enabling a wide range of learning tasks such as human activity recognition, 3D pose estimation, multi-modal fusion, cross-modal supervision, and sensor foundation models. Extensive experiments have been conducted to demonstrate the sensing capacity using various baselines. OctoNet offers a unique and unified testbed for developing and benchmarking generalizable, robust models for human-centric sensing AI.
Enhancing Compositional Reasoning in CLIP via Reconstruction and Alignment of Text Descriptions
Despite recent advances, vision-language models trained with standard contrastive objectives still struggle with compositional reasoning - the ability to understand structured relationships between visual and linguistic elements. This shortcoming is largely due to the tendency of the text encoder to focus on individual words rather than their relations, a limitation reinforced by contrastive training that primarily aligns words with visual objects. In this paper, we introduce REconstruction and Alignment of text Descriptions (READ), a fine-tuning method designed to enhance compositional reasoning by adding two auxiliary objectives to the contrastive learning: (1) a token-level reconstruction objective, where a frozen pre-trained decoder reconstructs alternative captions based on the embedding of the original caption; and (2) a sentence-level alignment objective, which explicitly aligns paraphrased sentences in the embedding space. We show that READ-CLIP, a model derived by applying the READ method to the pre-trained CLIP model, achieves the state-of-the-art performance across five major compositional reasoning benchmarks, outperforming the strongest conventional fine-tuning baseline by up to 4.1%. Furthermore, applying the READ to existing CLIP variants (including NegCLIP and FSC-CLIP) also improves performance on these benchmarks. Quantitative and qualitative analyses reveal that our proposed objectives - reconstruction and alignment - offer complementary benefits: the former encourages the encoder to capture relationships between words within a caption, while the latter ensures consistent representations for paraphrases expressed with different wording.
SSTAG: Structure-Aware Self-Supervised Learning Method for Text-Attributed Graphs
Large-scale pre-trained models have revolutionized Natural Language Processing (NLP) and Computer Vision (CV), showcasing remarkable cross-domain generalization abilities. However, in graph learning, models are typically trained on individual graph datasets, limiting their capacity to transfer knowledge across different graphs and tasks. This approach also heavily relies on large volumes of annotated data, which presents a significant challenge in resource-constrained settings. Unlike NLP and CV, graph-structured data presents unique challenges due to its inherent heterogeneity, including domain-specific feature spaces and structural diversity across various applications. To address these challenges, we propose a novel structure-aware self-supervised learning method for Text-Attributed Graphs (SSTAG).
Enhancing Optimizer Stability: Momentum Adaptation of The NGNStep-size
Modern optimization algorithms that incorporate momentum and adaptive stepsize offer improved performance in numerous challenging deep learning tasks. However, their effectiveness is often highly sensitive to the choice of hyperparameters, especially the learning rate (LR). Tuning these parameters is often difficult, resource-intensive, and time-consuming. Therefore, recent efforts have been directed toward enhancing the stability of optimizers across a wide range of hyper-parameter choices [79]. In this paper, we introduce an algorithm that matches the performance of state-of-the-art optimizers while improving stability through a novel adaptation of the NGN step-size method [66]. Specifically, we propose a momentum-based version (NGN-M) that attains the standard convergence rate of O(1/ K)under common assumptions, without the need for interpolation condition or assumptions of bounded stochastic gradients or iterates, in contrast to previous approaches. Additionally, we empirically demonstrate that the combination of the NGN step-size with momentum results in high robustness while delivering performance that is comparable to or surpasses other state-of-the-art optimizers.