An explosion of high-throughput DNA sequencing in the past decade has led to a surge of interest in population-scale inference with whole-genome data. Recent work in population genetics has centered on designing inference methods for relatively simple model classes, and few scalable general-purpose inference techniques exist for more realistic, complex models. To achieve this, two inferential challenges need to be addressed: (1) population data are exchangeable, calling for methods that efficiently exploit the symmetries of the data, and (2) computing likelihoods is intractable as it requires integrating over a set of correlated, extremely high-dimensional latent variables. These challenges are traditionally tackled by likelihood-free methods that use scientific simulators to generate datasets and reduce them to hand-designed, permutation-invariant summary statistics, often leading to inaccurate inference. In this work, we develop an exchangeable neural network that performs summary statistic-free, likelihood-free inference. Our framework can be applied in a black-box fashion across a variety of simulation-based tasks, both within and outside biology. We demonstrate the power of our approach on the recombination hotspot testing problem, outperforming the state-of-the-art.

We study the interplay between sequential decision making and avoiding discrimination against protected groups, when examples arrive online and do not follow distributional assumptions. We consider the most basic extension of classical online learning: Given a class of predictors that are individually non-discriminatory with respect to a particular metric, how can we combine them to perform as well as the best predictor, while preserving non-discrimination? Surprisingly we show that this task is unachievable for the prevalent notion of equalized odds that requires equal false negative rates and equal false positive rates across groups. On the positive side, for another notion of non-discrimination, equalized error rates, we show that running separate instances of the classical multiplicative weights algorithm for each group achieves this guarantee. Interestingly, even for this notion, we show that algorithms with stronger performance guarantees than multiplicative weights cannot preserve non-discrimination.

We present a number of novel contributions to the multiple-source adaptation problem. We derive new normalized solutions with strong theoretical guarantees for the cross-entropy loss and other similar losses. We also provide new guarantees that hold in the case where the conditional probabilities for the source domains are distinct. Moreover, we give new algorithms for determining the distribution-weighted combination solution for the cross-entropy loss and other losses. We report the results of a series of experiments with real-world datasets. We find that our algorithm outperforms competing approaches by producing a single robust model that performs well on any target mixture distribution. Altogether, our theory, algorithms, and empirical results provide a full solution for the multiple-source adaptation problem with very practical benefits.

A generative recurrent neural network is quickly trained in an unsupervised manner to model popular reinforcement learning environments through compressed spatio-temporal representations. The world model's extracted features are fed into compact and simple policies trained by evolution, achieving state of the art results in various environments. We also train our agent entirely inside of an environment generated by its own internal world model, and transfer this policy back into the actual environment. Interactive version of this paper is available at https://worldmodels.github.io

Methods for learning from demonstration (LfD) have shown success in acquiring behavior policies by imitating a user. However, even for a single task, LfD may require numerous demonstrations. For versatile agents that must learn many tasks via demonstration, this process would substantially burden the user if each task were learned in isolation. To address this challenge, we introduce the novel problem of lifelong learning from demonstration, which allows the agent to continually build upon knowledge learned from previously demonstrated tasks to accelerate the learning of new tasks, reducing the amount of demonstrations required. As one solution to this problem, we propose the first lifelong learning approach to inverse reinforcement learning, which learns consecutive tasks via demonstration, continually transferring knowledge between tasks to improve performance.

Distributed training of deep nets is an important technique to address some of the present day computing challenges like memory consumption and computational demands. Classical distributed approaches, synchronous or asynchronous, are based on the parameter server architecture, i.e., worker nodes compute gradients which are communicated to the parameter server while updated parameters are returned. Recently, distributed training with AllReduce operations gained popularity as well. While many of those operations seem appealing, little is reported about wall-clock training time improvements. In this paper, we carefully analyze the AllReduce based setup, propose timing models which include network latency, bandwidth, cluster size and compute time, and demonstrate that a pipelined training with a width of two combines the best of both synchronous and asynchronous training. Specifically, for a setup consisting of a four-node GPU cluster we show wall-clock time training improvements of up to 5.4x compared to conventional approaches.

Robust matrix factorization (RMF), which uses the $\ell_1$-loss, often outperforms standard matrix factorization using the $\ell_2$-loss, particularly when outliers are present. The state-of-the-art RMF solver is the RMF-MM algorithm, which, however, cannot utilize data sparsity. Moreover, sometimes even the (convex) $\ell_1$-loss is not robust enough. In this paper, we propose the use of nonconvex loss to enhance robustness. To address the resultant difficult optimization problem, we use majorization-minimization (MM) optimization and propose a new MM surrogate. To improve scalability, we exploit data sparsity and optimize the surrogate via its dual with the accelerated proximal gradient algorithm. The resultant algorithm has low time and space complexities and is guaranteed to converge to a critical point. Extensive experiments demonstrate its superiority over the state-of-the-art in terms of both accuracy and scalability.

Suppose an n x d design matrix in a linear regression problem is given, but the response for each point is hidden unless explicitly requested. The goal is to sample only a small number k << n of the responses, and then produce a weight vector whose sum of squares loss over points is at most 1+epsilon times the minimum. When k is very small (e.g., k=d), jointly sampling diverse subsets of points is crucial. One such method called volume sampling has a unique and desirable property that the weight vector it produces is an unbiased estimate of the optimum. It is therefore natural to ask if this method offers the optimal unbiased estimate in terms of the number of responses k needed to achieve a 1+epsilon loss approximation. Surprisingly we show that volume sampling can have poor behavior when we require a very accurate approximation -- indeed worse than some i.i.d.

Bayesian optimization is a powerful tool for global optimization of expensive functions. One of its key components is the underlying probabilistic model used for the objective function f. In practice, however, it is often unclear how one should appropriately choose a model, especially when gathering data is expensive. In this work, we introduce a novel automated Bayesian optimization approach that dynamically selects promising models for explaining the observed data using Bayesian Optimization in the model space. Crucially, we account for the uncertainty in the choice of model; our method is capable of using multiple models to represent its current belief about f and subsequently using this information for decision making. We argue, and demonstrate empirically, that our approach automatically finds suitable models for the objective function, which ultimately results in more-efficient optimization.

Natural images may lie on a union of disjoint manifolds rather than one globally connected manifold, and this can cause several difficulties for the training of common Generative Adversarial Networks (GANs). In this work, we first show that single generator GANs are unable to correctly model a distribution supported on a disconnected manifold, and investigate how sample quality, mode dropping and local convergence are affected by this. Next, we show how using a collection of generators can address this problem, providing new insights into the success of such multi-generator GANs. Finally, we explain the serious issues caused by considering a fixed prior over the collection of generators and propose a novel approach for learning the prior and inferring the necessary number of generators without any supervision. Our proposed modifications can be applied on top of any other GAN model to enable learning of distributions supported on disconnected manifolds. We conduct several experiments to illustrate the aforementioned shortcoming of GANs, its consequences in practice, and the effectiveness of our proposed modifications in alleviating these issues.