A fundamental goal in network neuroscience is to understand how activity in one brain region drives activity elsewhere, a process referred to as effective connectivity. Here we propose to model this causal interaction using integro-differential equations and causal kernels that allow for a rich analysis of effective connectivity. The approach combines the tractability and flexibility of autoregressive modeling with the biophysical interpretability of dynamic causal modeling. The causal kernels are learned nonparametrically using Gaussian process regression, yielding an efficient framework for causal inference. We construct a novel class of causal covariance functions that enforce the desired properties of the causal kernels, an approach which we call GP CaKe. By construction, the model and its hyperparameters have biophysical meaning and are therefore easily interpretable. We demonstrate the efficacy of GP CaKe on a number of simulations and give an example of a realistic application on magnetoencephalography (MEG) data.

Variational autoencoders (VAEs) learn representations of data by jointly training a probabilistic encoder and decoder network.

From a small number of calls to a given "blackbox on random input perturbations, we show how to efficiently recover its unknown Jacobian, or estimate the left action of its Jacobian on a given vector. Our methods are based on a novel combination of compressed sensing and graph coloring techniques, and provably exploit structural prior knowledge about the Jacobian such as sparsity and symmetry while being noise robust. We demonstrate efficient backpropagation through noisy blackbox layers in a deep neural net, improved data-efficiency in the task of linearizing the dynamics of a rigid body system, and the generic ability to handle a rich class of input-output dependency structures in Jacobian estimation problems.

We present a learnt system for multi-view stereopsis. In contrast to recent learning based methods for 3D reconstruction, we leverage the underlying 3D geometry of the problem through feature projection and unprojection along viewing rays. By formulating these operations in a differentiable manner, we are able to learn the system end-to-end for the task of metric 3D reconstruction. End-to-end learning allows us to jointly reason about shape priors while conforming to geometric constraints, enabling reconstruction from much fewer images (even a single image) than required by classical approaches as well as completion of unseen surfaces. We thoroughly evaluate our approach on the ShapeNet dataset and demonstrate the benefits over classical approaches and recent learning based methods.

Recommendation for e-commerce with a mix of durable and nondurable goods has characteristics that distinguish it from the well-studied media recommendation problem. The demand for items is a combined effect of form utility and time utility, i.e., a product must both be intrinsically appealing to a consumer and the time must be right for purchase. In particular for durable goods, time utility is a function of inter-purchase duration within product category because consumers are unlikely to purchase two items in the same category in close temporal succession. Moreover, purchase data, in contrast to rating data, is implicit with non-purchases not necessarily indicating dislike. Together, these issues give rise to the positive-unlabeled demand-aware recommendation problem that we pose via joint low-rank tensor completion and product category inter-purchase duration vector estimation. We further relax this problem and propose a highly scalable alternating minimization approach with which we can solve problems with millions of users and millions of items in a single thread. We also show superior prediction accuracies on multiple real-world datasets.

Non-discrimination is a recognized objective in algorithmic decision making. In this paper, we introduce a novel probabilistic formulation of data pre-processing for reducing discrimination. We propose a convex optimization for learning a data transformation with three goals: controlling discrimination, limiting distortion in individual data samples, and preserving utility. We characterize the impact of limited sample size in accomplishing this objective. Two instances of the proposed optimization are applied to datasets, including one on real-world criminal recidivism. Results show that discrimination can be greatly reduced at a small cost in classification accuracy.

We revisit fuzzy neural network with a cornerstone notion of generalized hamming distance, which provides a novel and theoretically justified framework to re-interpret many useful neural network techniques in terms of fuzzy logic. In particular, we conjecture and empirically illustrate that, the celebrated batch normalization (BN) technique actually adapts the "normalized" bias such that it approximates the rightful bias induced by the generalized hamming distance. Once the due bias is enforced analytically, neither the optimization of bias terms nor the sophisticated batch normalization is needed. Also in the light of generalized hamming distance, the popular rectified linear units (ReLU) can be treated as setting a minimal hamming distance threshold between network inputs and weights. This thresholding scheme, on the one hand, can be improved by introducing double-thresholding on both positive and negative extremes of neuron outputs. On the other hand, ReLUs turn out to be non-essential and can be removed from networks trained for simple tasks like MNIST classification. The proposed generalized hamming network (GHN) as such not only lends itself to rigorous analysis and interpretation within the fuzzy logic theory but also demonstrates fast learning speed, well-controlled behaviour and state-of-the-art performances on a variety of learning tasks.

Intracortical brain-computer interfaces (iBCIs) have allowed people with tetraplegia to control a computer cursor by imagining the movement of their paralyzed arm or hand. State-of-the-art decoders deployed in human iBCIs are derived from a Kalman filter that assumes Markov dynamics on the angle of intended movement, and a unimodal dependence on intended angle for each channel of neural activity. Due to errors made in the decoding of noisy neural data, as a user attempts to move the cursor to a goal, the angle between cursor and goal positions may change rapidly. We propose a dynamic Bayesian network that includes the on-screen goal position as part of its latent state, and thus allows the person's intended angle of movement to be aggregated over a much longer history of neural activity. This multiscale model explicitly captures the relationship between instantaneous angles of motion and long-term goals, and incorporates semi-Markov dynamics for motion trajectories. We also introduce a multimodal likelihood model for recordings of neural populations which can be rapidly calibrated for clinical applications. In offline experiments with recorded neural data, we demonstrate significantly improved prediction of motion directions compared to the Kalman filter. We derive an efficient online inference algorithm, enabling a clinical trial participant with tetraplegia to control a computer cursor with neural activity in real time. The observed kinematics of cursor movement are objectively straighter and smoother than prior iBCI decoding models without loss of responsiveness.

Frank-Wolfe (FW) algorithms with linear convergence rates have recently achieved great efficiency in many applications. Garber and Meshi (2016) designed a new decomposition-invariant pairwise FW variant with favorable dependency on the domain geometry. Unfortunately, it applies only to a restricted class of polytopes and cannot achieve theoretical and practical efficiency at the same time. In this paper, we show that by employing an away-step update, similar rates can be generalized to arbitrary polytopes with strong empirical performance. A new condition number of the domain is introduced which allows leveraging the sparsity of the solution. We applied the method to a reformulation of SVM, and the linear convergence rate depends, for the first time, on the number of support vectors.

Given recent deep learning results that demonstrate the ability to effectively optimize high-dimensional non-convex functions with gradient descent optimization on GPUs, we ask in this paper whether symbolic gradient optimization tools such as Tensorflow can be effective for planning in hybrid (mixed discrete and continuous) nonlinear domains with high dimensional state and action spaces? To this end, we demonstrate that hybrid planning with Tensorflow and RMSProp gradient descent is competitive with mixed integer linear program (MILP) based optimization on piecewise linear planning domains (where we can compute optimal solutions) and substantially outperforms state-of-the-art interior point methods for nonlinear planning domains. Furthermore, we remark that Tensorflow is highly scalable, converging to a strong plan on a large-scale concurrent domain with a total of 576,000 continuous action parameters distributed over a horizon of 96 time steps and 100 parallel instances in only 4 minutes. We provide a number of insights that clarify such strong performance including observations that despite long horizons, RMSProp avoids both the vanishing and exploding gradient problems. Together these results suggest a new frontier for highly scalable planning in nonlinear hybrid domains by leveraging GPUs and the power of recent advances in gradient descent with highly optimized toolkits like Tensorflow.