Across scientific domains, generating new models or optimizing existing ones while meeting specific criteria is crucial. Traditional machine learning frameworks for guided design use a generative model and a surrogate model (discriminator), requiring large datasets. However, real-world scientific applications often have limited data and complex landscapes, making data-hungry models inefficient or impractical. We propose a new framework, PropEn, inspired by ``matching'', which enables implicit guidance without training a discriminator. By matching each sample with a similar one that has a better property value, we create a larger training dataset that inherently indicates the direction of improvement. Matching, combined with an encoder-decoder architecture, forms a domain-agnostic generative framework for property enhancement. We show that training with a matched dataset approximates the gradient of the property of interest while remaining within the data distribution, allowing efficient design optimization. Extensive evaluations in toy problems and scientific applications, such as therapeutic protein design and airfoil optimization, demonstrate PropEn's advantages over common baselines. Notably, the protein design results are validated with wet lab experiments, confirming the competitiveness and effectiveness of our approach.

The pretraining-finetuning paradigm has gained widespread adoption in vision tasks and other fields. However, the finetuning phase still requires high-quality annotated samples. To overcome this challenge, the concept of active finetuning has emerged, aiming to select the most appropriate samples for model finetuning within a limited budget.

This paper aims to discuss the impact of random initialization of neural networks in the neural tangent kernel (NTK) theory, which is ignored by most recent works in the NTK theory. It is well known that as the network's width tends to infinity, the neural network with random initialization converges to a Gaussian process (f^{\mathrm{GP}}), which takes values in (L^{2}(\mathcal{X})), where (\mathcal{X}) is the domain of the data. In contrast, to adopt the traditional theory of kernel regression, most recent works introduced a special mirrored architecture and a mirrored (random) initialization to ensure the network's output is identically zero at initialization. Therefore, it remains a question whether the conventional setting and mirrored initialization would make wide neural networks exhibit different generalization capabilities.

Recent advances in out-of-distribution (OOD) detection on image data show that pre-trained neural network classifiers can separate in-distribution (ID) from OOD data well, leveraging the class-discriminative ability of the model itself. Methods have been proposed that either use logit information directly or that process the model's penultimate layer activations. With WeiPer, we introduce perturbations of the class projections in the final fully connected layer which creates a richer representation of the input. We show that this simple trick can improve the OOD detection performance of a variety of methods and additionally propose a distance-based method that leverages the properties of the augmented WeiPer space. We achieve state-of-the-art OOD detection results across multiple benchmarks of the OpenOOD framework, especially pronounced in difficult settings in which OOD samples are positioned close to the training set distribution. We support our findings with theoretical motivations and empirical observations, and run extensive ablations to provide insights into why WeiPer works. Our code is available at: https://github.com/mgranz/weiper.

The momentum acceleration technique is widely adopted in many optimization algorithms. However, there is no theoretical answer on how the momentum affects the generalization performance of the optimization algorithms.

In this work we analyze various scaling limits of the training dynamics of transformer models in the feature learning regime. We identify the set of parameterizations which admit well defined infinite width and depth limits that allow the attention layers to update throughout training, a relevant notion of feature learning in these models. We then use tools from dynamical mean field theory (DMFT) to analyze various infinite limits (infinite heads, infinite key/query dimension, and infinite depth) which have different statistical descriptions depending on which infinite limit is taken and how attention layers are scaled. We provide numerical evidence of convergence to the limits and show they maintain the correct scale of updates for both SGD and Adam.

Complex-valued neural networks potentially possess better representations and performance than real-valued counterparts when dealing with some complicated tasks such as acoustic analysis, radar image classification, etc. Despite empirical successes, it remains unknown theoretically when and to what extent complex-valued neural networks outperform real-valued ones. We take one step in this direction by comparing the learnability of real-valued neurons and complex-valued neurons via gradient descent. We show that a complex-valued neuron can efficiently learn functions expressed by any one real-valued neuron and any one complex-valued neuron with convergence rate $O(t^{-3})$ and $O(t^{-1})$ where $t$ is the iteration index of gradient descent, respectively, whereas a two-layer real-valued neural network with finite width cannot learn a single non-degenerate complex-valued neuron. We prove that a complex-valued neuron learns a real-valued neuron with rate $\Omega (t^{-3})$, exponentially slower than the $O(\mathrm{e}^{- c t})$ rate of learning one real-valued neuron using a real-valued neuron with a constant $c$. We further verify and extend these results via simulation experiments in more general settings.

However, existing benchmarks focus on outdated content and limited fields, facing difficulties in real-time updating and leaving new terms unexplored. To address this problem, we propose an adaptive benchmark, NewTerm, for real-time evaluation of new terms. We design a highly automated construction method to ensure high-quality benchmark construction with minimal human effort, allowing flexible updates for real-time information. Empirical results on various LLMs demonstrate over 20% performance reduction caused by new terms. Additionally, while updates to the knowledge cutoff of LLMs can cover some of the new terms, they are unable to generalize to more distant new terms. We also analyze which types of terms are more challenging and why LLMs struggle with new terms, paving the way for future research. Finally, we construct NewTerm 2022 and 2023 to evaluate the new terms updated each year and will continue updating annually. The benchmark and codes can be found at https://anonymous.4open.science/r/NewTerms.

In this work, we study the dormant neuron phenomenon in multi-agent reinforcement learning value factorization, where the mixing network suffers from reduced network expressivity caused by an increasing number of inactive neurons. We demonstrate the presence of the dormant neuron phenomenon across multiple environments and algorithms, and show that this phenomenon negatively affects the learning process. We show that dormant neurons correlates with the existence of over-active neurons, which have large activation scores. To address the dormant neuron issue, we propose ReBorn, a simple but effective method that transfers the weights from over-active neurons to dormant neurons. We theoretically show that this method can ensure the learned action preferences are not forgotten after the weight-transferring procedure, which increases learning effectiveness. Our extensive experiments reveal that ReBorn achieves promising results across various environments and improves the performance of multiple popular value factorization approaches.

Protein language models (PLMs) have shown remarkable capabilities in various protein function prediction tasks. However, while protein function is intricately tied to structure, most existing PLMs do not incorporate protein structure information. To address this issue, we introduce ProSST, a Transformer-based protein language model that seamlessly integrates both protein sequences and structures. ProSST incorporates a structure quantization module and a Transformer architecture with disentangled attention.