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Reprogramming Pretrained Target-Specific Diffusion Models for Dual-Target Drug Design

Neural Information Processing Systems

Dual-target therapeutic strategies have become a compelling approach and attracted significant attention due to various benefits, such as their potential in overcoming drug resistance in cancer therapy. Considering the tremendous success that deep generative models have achieved in structure-based drug design in recent years, we formulate dual-target drug design as a generative task and curate a novel dataset of potential target pairs based on synergistic drug combinations. We propose to design dual-target drugs with diffusion models that are trained on single-target protein-ligand complex pairs. Specifically, we align two pockets in 3D space with protein-ligand binding priors and build two complex graphs with shared ligand nodes for SE(3)-equivariant composed message passing, based on which we derive a composed drift in both 3D and categorical probability space in the generative process. Our algorithm can well transfer the knowledge gained in single-target pretraining to dual-target scenarios in a zero-shot manner.


Bayesian Domain Adaptation with Gaussian Mixture Domain-Indexing

Neural Information Processing Systems

Recent methods are proposed to improve performance of domain adaptation by inferring domain index under an adversarial variational bayesian framework, where domain index is unavailable. However, existing methods typically assume that the global domain indices are sampled from a vanilla gaussian prior, overlooking the inherent structures among different domains.To address this challenge, we propose a Bayesian Domain Adaptation with Gaussian Mixture Domain-Indexing(GMDI) algorithm. GMDI employs a Gaussian Mixture Model for domain indices, with the number of component distributions in the domain-themes'' space adaptively determined by a Chinese Restaurant Process. By dynamically adjusting the mixtures at the domain indices level, GMDI significantly improves domain adaptation performance. Our theoretical analysis demonstrates that GMDI achieves a more stringent evidence lower bound, closer to the log-likelihood. For classification, GMDI outperforms all approaches, and surpasses the state-of-the-art method, VDI, by up to 3.4%, reaching 99.3%. For regression, GMDI reduces MSE by up to 21% (from 3.160 to 2.493), achieving the lowest errors among all methods.


End-to-End Ontology Learning with Large Language Models

Neural Information Processing Systems

Ontologies are useful for automatic machine processing of domain knowledge as they represent it in a structured format. Yet, constructing ontologies requires substantial manual effort. To automate part of this process, large language models (LLMs) have been applied to solve various subtasks of ontology learning. However, this partial ontology learning does not capture the interactions between subtasks. We address this gap by introducing OLLM, a general and scalable method for building the taxonomic backbone of an ontology from scratch.


Amnesia as a Catalyst for Enhancing Black Box Pixel Attacks in Image Classification and Object Detection

Neural Information Processing Systems

It is well known that query-based attacks tend to have relatively higher successrates in adversarial black-box attacks. While research on black-box attacks is activelybeing conducted, relatively few studies have focused on pixel attacks thattarget only a limited number of pixels. In image classification, query-based pixelattacks often rely on patches, which heavily depend on randomness and neglectthe fact that scattered pixels are more suitable for adversarial attacks. Moreover, tothe best of our knowledge, query-based pixel attacks have not been explored in thefield of object detection. To address these issues, we propose a novel pixel-basedblack-box attack called Remember and Forget Pixel Attack using ReinforcementLearning(RFPAR), consisting of two main components: the Remember and Forgetprocesses. RFPAR mitigates randomness and avoids patch dependency byleveraging rewards generated through a one-step RL algorithm to perturb pixels.RFPAR effectively creates perturbed images that minimize the confidence scoreswhile adhering to limited pixel constraints. Furthermore, we advance our proposedattack beyond image classification to object detection, where RFPAR reducesthe confidence scores of detected objects to avoid detection.


You Only Look Around: Learning Illumination-Invariant Feature for Low-light Object Detection

Neural Information Processing Systems

In this paper, we introduce YOLA, a novel framework for object detection in low-light scenarios. Unlike previous works, we propose to tackle this challenging problem from the perspective of feature learning. Specifically, we propose to learn illumination-invariant features through the Lambertian image formation model. We observe that, under the Lambertian assumption, it is feasible to approximate illumination-invariant feature maps by exploiting the interrelationships between neighboring color channels and spatially adjacent pixels. By incorporating additional constraints, these relationships can be characterized in the form of convolutional kernels, which can be trained in a detection-driven manner within a network. Towards this end, we introduce a novel module dedicated to the extraction of illumination-invariant features from low-light images, which can be easily integrated into existing object detection frameworks. Our empirical findings reveal significant improvements in low-light object detection tasks, as well as promising results in both well-lit and over-lit scenarios.


Adaptive Q -Aid for Conditional Supervised Learning in Offline Reinforcement Learning

Neural Information Processing Systems

Offline reinforcement learning (RL) has progressed with return-conditioned supervised learning (RCSL), but its lack of stitching ability remains a limitation. We introduce $Q$-Aided Conditional Supervised Learning (QCS), which effectively combines the stability of RCSL with the stitching capability of $Q$-functions. By analyzing $Q$-function over-generalization, which impairs stable stitching, QCS adaptively integrates $Q$-aid into RCSL's loss function based on trajectory return. Empirical results show that QCS significantly outperforms RCSL and value-based methods, consistently achieving or exceeding the highest trajectory returns across diverse offline RL benchmarks. QCS represents a breakthrough in offline RL, pushing the limits of what can be achieved and fostering further innovations.


FedFed: Feature Distillation against Data Heterogeneity in Federated Learning

Neural Information Processing Systems

Federated learning (FL) typically faces data heterogeneity, i.e., distribution shifting among clients. Sharing clients' information has shown great potentiality in mitigating data heterogeneity, yet incurs a dilemma in preserving privacy and promoting model performance. To alleviate the dilemma, we raise a fundamental question: Is it possible to share partial features in the data to tackle data heterogeneity?In this work, we give an affirmative answer to this question by proposing a novel approach called Fed


Transcendence: Generative Models Can Outperform The Experts That Train Them

Neural Information Processing Systems

Generative models are trained with the simple objective of imitating the conditional probability distribution induced by the data they are trained on. Therefore, when trained on data generated by humans, we may not expect the artificial model to outperform the humans on their original objectives. In this work, we study the phenomenon of: when a generative model achieves capabilities that surpass the abilities of the experts generating its data. We demonstrate transcendence by training an autoregressive transformer to play chess from game transcripts, and show that the trained model can sometimes achieve better performance than all players in the dataset. We theoretically prove that transcendence is enabled by low-temperature sampling, and rigorously assess this experimentally. Finally, we discuss other sources of transcendence, laying the groundwork for future investigation of this phenomenon in a broader setting.


Unveiling User Satisfaction and Creator Productivity Trade-Offs in Recommendation Platforms

Neural Information Processing Systems

On User-Generated Content (UGC) platforms, recommendation algorithms significantly impact creators' motivation to produce content as they compete for algorithmically allocated user traffic. This phenomenon subtly shapes the volume and diversity of the content pool, which is crucial for the platform's sustainability. In this work, we demonstrate, both theoretically and empirically, that a purely relevance-driven policy with low exploration strength boosts short-term user satisfaction but undermines the long-term richness of the content pool. In contrast, a more aggressive exploration policy may slightly compromise user satisfaction but promote higher content creation volume. Our findings reveal a fundamental trade-off between immediate user satisfaction and overall content production on UGC platforms. Building on this finding, we propose an efficient optimization method to identify the optimal exploration strength, balancing user and creator engagement. Our model can serve as a pre-deployment audit tool for recommendation algorithms on UGC platforms, helping to align their immediate objectives with sustainable, long-term goals.


Reducing Transformer Key-Value Cache Size with Cross-Layer Attention

Neural Information Processing Systems

Key-value (KV) caching plays an essential role in accelerating decoding for transformer-based autoregressive large language models (LLMs). However, the amount of memory required to store the KV cache can become prohibitive at long sequence lengths and large batch sizes. Since the invention of the transformer, two of the most effective interventions discovered for reducing the size of the KV cache have been Multi-Query Attention (MQA) and its generalization, Grouped-Query Attention (GQA). MQA and GQA both modify the design of the attention block so that multiple query heads can share a single key/value head, reducing the number of distinct key/value heads by a large factor while only minimally degrading accuracy. In this paper, we show that it is possible to take Multi-Query Attention a step further by also sharing key and value heads between adjacent layers, yielding a new attention design we call Cross-Layer Attention (CLA). With CLA, we find that it is possible to reduce the size of the KV cache by another $2\times$ while maintaining nearly the same accuracy as unmodified MQA. In experiments training 1Band 3B-parameter models from scratch, we demonstrate that CLA provides a Pareto improvement over the memory/accuracy tradeoffs which are possible with traditional MQA, potentially enabling future models to operate at longer sequence lengths and larger batch sizes than would otherwise be possible.