We consider the problem of estimating Shannon's entropy H in the under-sampled regime, where the number of possible symbols may be unknown or countably infinite. Pitman-Yor processes (a generalization of Dirichlet processes) provide tractable prior distributions over the space of countably infinite discrete distributions, and have found major applications in Bayesian non-parametric statistics and machine learning. Here we show that they also provide natural priors for Bayesian entropy estimation, due to the remarkable fact that the moments of the induced posterior distribution over H can be computed analytically. We derive formulas for the posterior mean (Bayes' least squares estimate) and variance under such priors. Moreover, we show that a fixed Dirichlet or Pitman-Yor process prior implies a narrow prior on H, meaning the prior strongly determines the entropy estimate in the under-sampled regime.

Biased labelers are a systemic problem in crowdsourcing, and a comprehensive toolbox for handling their responses is still being developed. A typical crowdsourcing application can be divided into three steps: data collection, data curation, and learning. At present these steps are often treated separately. We present Bayesian Bias Mitigation for Crowdsourcing (BBMC), a Bayesian model to unify all three. Most data curation methods account for the {\it effects} of labeler bias by modeling all labels as coming from a single latent truth.

Characterizing the information carried by neural populations in the brain requires accurate statistical models of neural spike responses. The negative-binomial distribution provides a convenient model for over-dispersed spike counts, that is, responses with greater-than-Poisson variability. Here we describe a powerful data-augmentation framework for fully Bayesian inference in neural models with negative-binomial spiking. Our approach relies on a recently described latent-variable representation of the negative-binomial distribution, which equates it to a Polya-gamma mixture of normals. This framework provides a tractable, conditionally Gaussian representation of the posterior that can be used to design efficient EM and Gibbs sampling based algorithms for inference in regression and dynamic factor models.

We propose a new sparse Bayesian model for multi-task regression and classification. The model is able to capture correlations between tasks, or more specifically a low-rank approximation of the covariance matrix, while being sparse in the features. We introduce a general family of group sparsity inducing priors based on matrix-variate Gaussian scale mixtures. We show the amount of sparsity can be learnt from the data by combining an approximate inference approach with type II maximum likelihood estimation of the hyperparameters. Empirical evaluations on data sets from biology and vision demonstrate the applicability of the model, where on both regression and classification tasks it achieves competitive predictive performance compared to previously proposed methods.

A nonparametric kernel-based method for realizing Bayes' rule is proposed, based on kernel representations of probabilities in reproducing kernel Hilbert spaces. The prior and conditional probabilities are expressed as empirical kernel mean and covariance operators, respectively, and the kernel mean of the posterior distribution is computed in the form of a weighted sample. The kernel Bayes' rule can be applied to a wide variety of Bayesian inference problems: we demonstrate Bayesian computation without likelihood, and filtering with a nonparametric state-space model. A consistency rate for the posterior estimate is established. Papers published at the Neural Information Processing Systems Conference.

Neurons typically respond to a restricted number of stimulus features within the high-dimensional space of natural stimuli. Here we describe an explicit model-based interpretation of traditional estimators for a neuron's multi-dimensional feature space, which allows for several important generalizations and extensions. First, we show that traditional estimators based on the spike-triggered average (STA) and spike-triggered covariance (STC) can be formalized in terms of the "expected log-likelihood" of a Linear-Nonlinear-Poisson (LNP) model with Gaussian stimuli. This model-based formulation allows us to define maximum-likelihood and Bayesian estimators that are statistically consistent and efficient in a wider variety of settings, such as with naturalistic (non-Gaussian) stimuli. It also allows us to employ Bayesian methods for regularization, smoothing, sparsification, and model comparison, and provides Bayesian confidence intervals on model parameters.

We present an asymptotic analysis of Viterbi Training (VT) and contrast it with a more conventional Maximum Likelihood (ML) approach to parameter estimation in Hidden Markov Models. While ML estimator works by (locally) maximizing the likelihood of the observed data, VT seeks to maximize the probability of the most likely hidden state sequence. We develop an analytical framework based on a generating function formalism and illustrate it on an exactly solvable model of HMM with one unambiguous symbol. For this particular model the ML objective function is continuously degenerate. VT objective, in contrast, is shown to have only finite degeneracy.

Unlike existing nonparametric Bayesian models, which rely solely on specially conceived priors to incorporate domain knowledge for discovering improved latent representations, we study nonparametric Bayesian inference with regularization on the desired posterior distributions. While priors can indirectly affect posterior distributions through Bayes' theorem, imposing posterior regularization is arguably more direct and in some cases can be much easier. We particularly focus on developing infinite latent support vector machines (iLSVM) and multi-task infinite latent support vector machines (MT-iLSVM), which explore the large-margin idea in combination with a nonparametric Bayesian model for discovering predictive latent features for classification and multi-task learning, respectively. We present efficient inference methods and report empirical studies on several benchmark datasets. Our results appear to demonstrate the merits inherited from both large-margin learning and Bayesian nonparametrics.

We develop a Bayesian nonparametric extension of the popular Plackett-Luce choice model that can handle an infinite number of choice items. Our framework is based on the theory of random atomic measures, with the prior specified by a gamma process. We derive a posterior characterization and a simple and effective Gibbs sampler for posterior simulation. We then develop a time-varying extension of our model, and apply our model to the New York Times lists of weekly bestselling books. Papers published at the Neural Information Processing Systems Conference.

How does the brain combine prior knowledge with sensory evidence when making decisions under uncertainty? Two competing descriptive models have been proposed based on experimental data. The first posits an additive offset to a decision variable, implying a static effect of the prior. However, this model is inconsistent with recent data from a motion discrimination task involving temporal integration of uncertain sensory evidence. To explain this data, a second model has been proposed which assumes a time-varying influence of the prior.