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 Bayesian Inference


Dependence-Aware Label Aggregation for LLM-as-a-Judge via Ising Models

arXiv.org Machine Learning

Large-scale AI evaluation increasingly relies on aggregating binary judgments from $K$ annotators, including LLMs used as judges. Most classical methods, e.g., Dawid-Skene or (weighted) majority voting, assume annotators are conditionally independent given the true label $Y\in\{0,1\}$, an assumption often violated by LLM judges due to shared data, architectures, prompts, and failure modes. Ignoring such dependencies can yield miscalibrated posteriors and even confidently incorrect predictions. We study label aggregation through a hierarchy of dependence-aware models based on Ising graphical models and latent factors. For class-dependent Ising models, the Bayes log-odds is generally quadratic in votes; for class-independent couplings, it reduces to a linear weighted vote with correlation-adjusted parameters. We present finite-$K$ examples showing that methods based on conditional independence can flip the Bayes label despite matching per-annotator marginals. We prove separation results demonstrating that these methods remain strictly suboptimal as the number of judges grows, incurring nonvanishing excess risk under latent factors. Finally, we evaluate the proposed method on three real-world datasets, demonstrating improved performance over the classical baselines.


Amortized Simulation-Based Inference in Generalized Bayes via Neural Posterior Estimation

arXiv.org Machine Learning

Generalized Bayesian Inference (GBI) tempers a loss with a temperature $ฮฒ>0$ to mitigate overconfidence and improve robustness under model misspecification, but existing GBI methods typically rely on costly MCMC or SDE-based samplers and must be re-run for each new dataset and each $ฮฒ$ value. We give the first fully amortized variational approximation to the tempered posterior family $p_ฮฒ(ฮธ\mid x) \propto ฯ€(ฮธ)\,p(x \mid ฮธ)^ฮฒ$ by training a single $(x,ฮฒ)$-conditioned neural posterior estimator $q_ฯ•(ฮธ\mid x,ฮฒ)$ that enables sampling in a single forward pass, without simulator calls or inference-time MCMC. We introduce two complementary training routes: (i) synthesize off-manifold samples $(ฮธ,x) \sim ฯ€(ฮธ)\,p(x \mid ฮธ)^ฮฒ$ and (ii) reweight a fixed base dataset $ฯ€(ฮธ)\,p(x \mid ฮธ)$ using self-normalized importance sampling (SNIS). We show that the SNIS-weighted objective provides a consistent forward-KL fit to the tempered posterior with finite weight variance. Across four standard simulation-based inference (SBI) benchmarks, including the chaotic Lorenz-96 system, our $ฮฒ$-amortized estimator achieves competitive posterior approximations in standard two-sample metrics, matching non-amortized MCMC-based power-posterior samplers over a wide range of temperatures.


Neural Backward Filtering Forward Guiding

arXiv.org Machine Learning

Inference in non-linear continuous stochastic processes on trees is challenging, particularly when observations are sparse (leaf-only) and the topology is complex. Exact smoothing via Doob's $h$-transform is intractable for general non-linear dynamics, while particle-based methods degrade in high dimensions. We propose Neural Backward Filtering Forward Guiding (NBFFG), a unified framework for both discrete transitions and continuous diffusions. Our method constructs a variational posterior by leveraging an auxiliary linear-Gaussian process. This auxiliary process yields a closed-form backward filter that serves as a ``guide'', steering the generative path toward high-likelihood regions. We then learn a neural residual--parameterized as a normalizing flow or a controlled SDE--to capture the non-linear discrepancies. This formulation allows for an unbiased path-wise subsampling scheme, reducing the training complexity from tree-size dependent to path-length dependent. Empirical results show that NBFFG outperforms baselines on synthetic benchmarks, and we demonstrate the method on a high-dimensional inference task in phylogenetic analysis with reconstruction of ancestral butterfly wing shapes.


Neural-Inspired Posterior Approximation (NIPA)

arXiv.org Machine Learning

Humans learn efficiently from their environment by engaging multiple interacting neural systems that support distinct yet complementary forms of control, including model-based (goal-directed) planning, model-free (habitual) responding, and episodic memory-based learning. Model-based mechanisms compute prospective action values using an internal model of the environment, supporting flexible but computationally costly planning; model-free mechanisms cache value estimates and build heuristics that enable fast, efficient habitual responding; and memory-based mechanisms allow rapid adaptation from individual experience. In this work, we aim to elucidate the computational principles underlying this biological efficiency and translate them into a sampling algorithm for scalable Bayesian inference through effective exploration of the posterior distribution. More specifically, our proposed algorithm comprises three components: a model-based module that uses the target distribution for guided but computationally slow sampling; a model-free module that uses previous samples to learn patterns in the parameter space, enabling fast, reflexive sampling without directly evaluating the expensive target distribution; and an episodic-control module that supports rapid sampling by recalling specific past events (i.e., samples). We show that this approach advances Bayesian methods and facilitates their application to large-scale statistical machine learning problems. In particular, we apply our proposed framework to Bayesian deep learning, with an emphasis on proper and principled uncertainty quantification.


Supervised Guidance Training for Infinite-Dimensional Diffusion Models

arXiv.org Machine Learning

Score-based diffusion models have recently been extended to infinite-dimensional function spaces, with uses such as inverse problems arising from partial differential equations. In the Bayesian formulation of inverse problems, the aim is to sample from a posterior distribution over functions obtained by conditioning a prior on noisy observations. While diffusion models provide expressive priors in function space, the theory of conditioning them to sample from the posterior remains open. We address this, assuming that either the prior lies in the Cameron-Martin space, or is absolutely continuous with respect to a Gaussian measure. We prove that the models can be conditioned using an infinite-dimensional extension of Doob's $h$-transform, and that the conditional score decomposes into an unconditional score and a guidance term. As the guidance term is intractable, we propose a simulation-free score matching objective (called Supervised Guidance Training) enabling efficient and stable posterior sampling. We illustrate the theory with numerical examples on Bayesian inverse problems in function spaces. In summary, our work offers the first function-space method for fine-tuning trained diffusion models to accurately sample from a posterior.


A Theory of Universal Agnostic Learning

arXiv.org Machine Learning

We provide a complete theory of optimal universal rates for binary classification in the agnostic setting. This extends the realizable-case theory of Bousquet, Hanneke, Moran, van Handel, and Yehudayoff (2021) by removing the realizability assumption on the distribution. We identify a fundamental tetrachotomy of optimal rates: for every concept class, the optimal universal rate of convergence of the excess error rate is one of $e^{-n}$, $e^{-o(n)}$, $o(n^{-1/2})$, or arbitrarily slow. We further identify simple combinatorial structures which determine which of these categories any given concept class falls into.


Factorizable joint shift revisited

arXiv.org Machine Learning

Such failure can be caused by distribution shift (also known as dataset shift) between the training and test datasets. For this reason, distribution shift and domain adaptation (a notion comprising techniques for tackling distribution shift) has been a major research topic in machine learning for some time. This paper takes the perspective of Kouw and Loog (2021) and studies the case where feature observations from the test dataset are available for analysis but observations of labels are missing. Under these circumstances, without any assumptions on the nature of the distribution shift between the training and test datasets meaningful prediction of the labels in the test dataset or of their distribution is not feasible. See Kouw and Loog (2021) for a survey of approaches to domain adaptation and their related assumptions. Arguably, covariate shift (also known as population drift) and label shift (also known as prior probability shift or target shift) are the most popular specific distribution shift assumptions, both for their intuiveness as well as their computational manageability. However, exclusive covariate and label shift assumptions have been criticised for being insufficient for common domain adaptation tasks (e.g.


Bulk-Calibrated Credal Ambiguity Sets: Fast, Tractable Decision Making under Out-of-Sample Contamination

arXiv.org Machine Learning

Distributionally robust optimisation (DRO) minimises the worst-case expected loss over an ambiguity set that can capture distributional shifts in out-of-sample environments. While Huber (linear-vacuous) contamination is a classical minimal-assumption model for an $\varepsilon$-fraction of arbitrary perturbations, including it in an ambiguity set can make the worst-case risk infinite and the DRO objective vacuous unless one imposes strong boundedness or support assumptions. We address these challenges by introducing bulk-calibrated credal ambiguity sets: we learn a high-mass bulk set from data while considering contamination inside the bulk and bounding the remaining tail contribution separately. This leads to a closed-form, finite $\mathrm{mean}+\sup$ robust objective and tractable linear or second-order cone programs for common losses and bulk geometries. Through this framework, we highlight and exploit the equivalence between the imprecise probability (IP) notion of upper expectation and the worst-case risk, demonstrating how IP credal sets translate into DRO objectives with interpretable tolerance levels. Experiments on heavy-tailed inventory control, geographically shifted house-price regression, and demographically shifted text classification show competitive robustness-accuracy trade-offs and efficient optimisation times, using Bayesian, frequentist, or empirical reference distributions.


Latent-IMH: Efficient Bayesian Inference for Inverse Problems with Approximate Operators

arXiv.org Machine Learning

We study sampling from posterior distributions in Bayesian linear inverse problems where $A$, the parameters to observables operator, is computationally expensive. In many applications, $A$ can be factored in a manner that facilitates the construction of a cost-effective approximation $\tilde{A}$. In this framework, we introduce Latent-IMH, a sampling method based on the Metropolis-Hastings independence (IMH) sampler. Latent-IMH first generates intermediate latent variables using the approximate $\tilde{A}$, and then refines them using the exact $A$. Its primary benefit is that it shifts the computational cost to an offline phase. We theoretically analyze the performance of Latent-IMH using KL divergence and mixing time bounds. Using numerical experiments on several model problems, we show that, under reasonable assumptions, it outperforms state-of-the-art methods such as the No-U-Turn sampler (NUTS) in computational efficiency. In some cases, Latent-IMH can be orders of magnitude faster than existing schemes.


Pathwise Learning of Stochastic Dynamical Systems with Partial Observations

arXiv.org Machine Learning

The reconstruction and inference of stochastic dynamical systems from data is a fundamental task in inverse problems and statistical learning. While surrogate modeling advances computational methods to approximate these dynamics, standard approaches typically require high-fidelity training data. In many practical settings, the data are indirectly observed through noisy and nonlinear measurement. The challenge lies not only in approximating the coefficients of the SDEs, but in simultaneously inferring the posterior updates given the observations. In this work, we present a neural path estimation approach to solve stochastic dynamical systems based on variational inference. We first derive a stochastic control problem that solve filtering posterior path measure corresponding to a pathwise Zakai equation. We then construct a generative model that maps the prior path measure to posterior measure through the controlled diffusion and the associated Randon-Nykodym derivative. Through an amortization of sample paths of the observation process, the control is learned by an embedding of the noisy observation paths. Thus, we learn the unknown prior SDE and the control can recover the conditional path measure given the observation sample paths and we learn an associated SDE which induces the same path measure. In the end, we perform experiments on nonlinear dynamical systems, demonstrating the model's ability to learn multimodal, chaotic, or high dimensional systems.