Bayesian Inference
Bayesian learning of orthogonal embeddings for multi-fidelity Gaussian Processes
Tsilifis, Panagiotis, Pandita, Piyush, Ghosh, Sayan, Andreoli, Valeria, Vandeputte, Thomas, Wang, Liping
We present a Bayesian approach to identify optimal transformations that map model input points to low dimensional latent variables. The "projection" mapping consists of an orthonormal matrix that is considered a priori unknown and needs to be inferred jointly with the GP parameters, conditioned on the available training data. The proposed Bayesian inference scheme relies on a two-step iterative algorithm that samples from the marginal posteriors of the GP parameters and the projection matrix respectively, both using Markov Chain Monte Carlo (MCMC) sampling. In order to take into account the orthogonality constraints imposed on the orthonormal projection matrix, a Geodesic Monte Carlo sampling algorithm is employed, that is suitable for exploiting probability measures on manifolds. We extend the proposed framework to multi-fidelity models using GPs including the scenarios of training multiple outputs together. We validate our framework on three synthetic problems with a known lower-dimensional subspace. The benefits of our proposed framework, are illustrated on the computationally challenging three-dimensional aerodynamic optimization of a last-stage blade for an industrial gas turbine, where we study the effect of an 85-dimensional airfoil shape parameterization on two output quantities of interest, specifically on the aerodynamic efficiency and the degree of reaction.
Event Prediction in the Big Data Era: A Systematic Survey
Events are occurrences in specific locations, time, and semantics that nontrivially impact either our society or the nature, such as civil unrest, system failures, and epidemics. It is highly desirable to be able to anticipate the occurrence of such events in advance in order to reduce the potential social upheaval and damage caused. Event prediction, which has traditionally been prohibitively challenging, is now becoming a viable option in the big data era and is thus experiencing rapid growth. There is a large amount of existing work that focuses on addressing the challenges involved, including heterogeneous multi-faceted outputs, complex dependencies, and streaming data feeds. Most existing event prediction methods were initially designed to deal with specific application domains, though the techniques and evaluation procedures utilized are usually generalizable across different domains. However, it is imperative yet difficult to cross-reference the techniques across different domains, given the absence of a comprehensive literature survey for event prediction. This paper aims to provide a systematic and comprehensive survey of the technologies, applications, and evaluations of event prediction in the big data era. First, systematic categorization and summary of existing techniques are presented, which facilitate domain experts' searches for suitable techniques and help model developers consolidate their research at the frontiers. Then, comprehensive categorization and summary of major application domains are provided. Evaluation metrics and procedures are summarized and standardized to unify the understanding of model performance among stakeholders, model developers, and domain experts in various application domains. Finally, open problems and future directions for this promising and important domain are elucidated and discussed.
Exploring Variational Deep Q Networks
This study provides both analysis and a refined, research-ready implementation of Tang and Kucukelbir's Variational Deep Q Network, a novel approach to maximising the efficiency of exploration in complex learning environments using Variational Bayesian Inference. Alongside reference implementations of both Traditional and Double Deep Q Networks, a small novel contribution is presented - the Double Variational Deep Q Network, which incorporates improvements to increase the stability and robustness of inference-based learning. Finally, an evaluation and discussion of the effectiveness of these approaches is discussed in the wider context of Bayesian Deep Learning.
Modeling and Prediction of Human Driver Behavior: A Survey
Brown, Kyle, Driggs-Campbell, Katherine, Kochenderfer, Mykel J.
We present a review and taxonomy of 200 models from the literature on driver behavior modeling. We begin by introducing a mathematical formulation based on the partially observable stochastic game, which serves as a common framework for comparing and contrasting different driver models. Our taxonomy is constructed around the core modeling tasks of state estimation, intention estimation, trait estimation, and motion prediction, and also discusses the auxiliary tasks of risk estimation, anomaly detection, behavior imitation and microscopic traffic simulation. Existing driver models are categorized based on the specific tasks they address and key attributes of their approach.
The Exact Asymptotic Form of Bayesian Generalization Error in Latent Dirichlet Allocation
It is applied to knowledge discovery via dimension reducing and clustering in many fields. However, its generalization error had not been yet clarified since it is a singular statistical model where there is no one to one map from parameters to probability distributions. In this paper, we give the exact asymptotic form of its generalization error and marginal likelihood, by theoretical analysis of its learning coefficient using algebraic geometry. The theoretical result shows that the Bayesian generalization error in LDA is expressed in terms of that in matrix factorization and a penalty from the simplex restriction of LDA's parameter region.
Statistical Inference of Minimally Complex Models
de Mulatier, Clélia, Mazza, Paolo P., Marsili, Matteo
Finding the best model that describes a high dimensional dataset, is a daunting task. For binary data, we show that this becomes feasible, if the search is restricted to simple models. These models -- that we call Minimally Complex Models (MCMs) -- are simple because they are composed of independent components of minimal complexity, in terms of description length. Simple models are easy to infer and to sample from. In addition, model selection within the MCMs' class is invariant with respect to changes in the representation of the data. They portray the structure of dependencies among variables in a simple way. They provide robust predictions on dependencies and symmetries, as illustrated in several examples. MCMs may contain interactions between variables of any order. So, for example, our approach reveals whether a dataset is appropriately described by a pairwise interaction model.
Dynamic Discrete Choice Estimation with Partially Observable States and Hidden Dynamics
Chang, Yanling, Garcia, Alfredo, Wang, Zhide
Dynamic discrete choice models are used to estimate the intertemporal preferences of an agent as described by a reward function based upon observable histories of states and implemented actions. However, in many applications, such as reliability and healthcare, the system state is partially observable or hidden (e.g., the level of deterioration of an engine, the condition of a disease), and the decision maker only has access to information imperfectly correlated with the true value of the hidden state. In this paper, we consider the estimation of a dynamic discrete choice model with state variables and system dynamics that are hidden (or partially observed) to both the agent and the modeler, thus generalizing Rust's model to partially observable cases. We analyze the structural properties of the model and prove that this model is still identifiable if the cardinality of the state space, the discount factor, the distribution of random shocks, and the rewards for a given (reference) action are given. We analyze both theoretically and numerically the potential mis-specification errors that may be incurred when Rust's model is improperly used in partially observable settings. We further apply the developed model to a subset of Rust's dataset for bus engine mileage and replacement decisions. The results show that our model can improve model fit as measured by the $\log$-likelihood function by $17.7\%$ and the $\log$-likelihood ratio test shows that our model statistically outperforms Rust's model. Interestingly, our hidden state model also reveals an economically meaningful route assignment behavior in the dataset which was hitherto ignored, i.e. routes with lower mileage are assigned to buses believed to be in worse condition.
Rule-based Bayesian regression
Botsas, Themistoklis, Mason, Lachlan R., Pan, Indranil
We introduce a novel rule-based approach for handling regression problems. The new methodology carries elements from two frameworks: (i) it provides information about the uncertainty of the parameters of interest using Bayesian inference, and (ii) it allows the incorporation of expert knowledge through rule-based systems. The blending of those two different frameworks can be particularly beneficial for various domains (e.g. engineering), where, even though the significance of uncertainty quantification motivates a Bayesian approach, there is no simple way to incorporate researcher intuition into the model. We validate our models by applying them to synthetic applications: a simple linear regression problem and two more complex structures based on partial differential equations. Finally, we review the advantages of our methodology, which include the simplicity of the implementation, the uncertainty reduction due to the added information and, in some occasions, the derivation of better point predictions, and we address limitations, mainly from the computational complexity perspective, such as the difficulty in choosing an appropriate algorithm and the added computational burden.
A Functional Model for Structure Learning and Parameter Estimation in Continuous Time Bayesian Network: An Application in Identifying Patterns of Multiple Chronic Conditions
Faruqui, Syed Hasib Akhter, Alaeddini, Adel, Wang, Jing, Jaramillo, Carlos A.
Abstract--Bayesian networks are powerful statistical models to study the probabilistic relationships among set random variables with major applications in disease modeling and prediction. Here, we propose a continuous time Bayesian network with conditional dependencies, represented as Poisson regression, to model the impact of exogenous variables on the conditional dependencies of the network. We also propose an adaptive regularization method with an intuitive early stopping feature based on density based clustering for efficient learning of the structure and parameters of the proposed network. Using a dataset of patients with multiple chronic conditions extracted from electronic health records of the Department of Veterans Affairs we compare the performance of the proposed approach with some of the existing methods in the literature for both short-term (one-year ahead) and long-term (multi-year ahead) predictions. The proposed approach provides a sparse intuitive representation of the complex functional relationships between multiple chronic conditions. It also provides the capability of analyzing multiple disease trajectories over time given any combination of prior conditions.
Variational approximations of empirical Bayes posteriors in high-dimensional linear models
In high-dimensions, the prior tails can have a significant effect on both posterior computation and asymptotic concentration rates. To achieve optimal rates while keeping the posterior computations relatively simple, an empirical Bayes approach has recently been proposed, featuring thin-tailed conjugate priors with data-driven centers. While conjugate priors ease some of the computational burden, Markov chain Monte Carlo methods are still needed, which can be expensive when dimension is high. In this paper, we develop a variational approximation to the empirical Bayes posterior that is fast to compute and retains the optimal concentration rate properties of the original. In simulations, our method is shown to have superior performance compared to existing variational approximations in the literature across a wide range of high-dimensional settings.